Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37590 552 / 0 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 537 / 0 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G14820 517 / 7e-178 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT2G23050 501 / 7e-174 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT4G31820 479 / 6e-164 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT1G67900 383 / 7e-126 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G47800 336 / 2e-108 Phototropic-responsive NPH3 family protein (.1) AT3G26490 335 / 8e-108 Phototropic-responsive NPH3 family protein (.1) AT5G03250 335 / 9e-108 Phototropic-responsive NPH3 family protein (.1) AT5G13600 315 / 5e-100 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011525 [exp] 1005 / 0 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 539 / 0 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 539 / 0 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 481 / 9e-164 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 447 / 4e-146 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 394 / 1e-129 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 355 / 3e-115 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 332 / 4e-106 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 328 / 1e-104 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146400 [exp] 633 / 0 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 560 / 0 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 559 / 0 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 514 / 5e-177 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 491 / 5e-168 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.010G046800 [exp] 400 / 2e-132 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.008G186100 [exp] 397 / 3e-131 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.016G003700 [exp] 369 / 6e-121 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.006G003000 [exp] 361 / 5e-118 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 356 / 7e-115 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10019297 pacid=23141364 polypeptide=Lus10019297 locus=Lus10019297.g ID=Lus10019297.BGIv1.0 annot-version=v1.0 ATGAAGTTTATGAAACTTGGATCTAAGCCTGATTGCTTCCGGACTCAAGGGGATAATATCAGGTATGTAGCTACTGAATTGGCAGCTGACATAGTAGTAA CCGTTAATGATGTCAAATTCTACCTCCACAAGTTTCCACTATTATCCAAGAGCTCCATGATGCAGAAGCTAGTCTCGAACTCAAACTCAAATGATGACGA GATCAACATCCATGACTTTCCAGGCGGACCGGCAGTGTTCGAGAAATGTGCAAAGTTCTGCTACGGAATGGCAGTCACCTTAAATCCATACAATGTAGTG GCAGCTCGGTGTGCATCGGAGTATCTCGAGATGTATGAGACAGTAGAGAAAGGAAACTTGGTCTACAAGATTGAGGTCTTCCTCAACTCCAGCATTTTCA GGAGCTGGAAAGACTCGATCGTCGTCCTCCAAACTACGAGGTCGTTCTTGCCACGGTCTGAGGAGTTGAATCTAGTCAACCGGTGCCTCGATTCCATCAC TTCGAAGGCCTGCATCGACACCTCGATGGTGACTTGGTCATATACCTATAACAGGAACAAGGATCAAAGGAAACTACAAATTAGTAGTGAGGTTCCGAAA GATTGGTGGGTGGAAGATCTATGTGAGCTTCCGATTGAATCATACCAAAGGGTAATCTCCAGAATTAGGGCGAAAGGTGAAGCCTTTAACAACGTAATCG GAGAATCCTTACATGCTTATGCTCTGAGAAGACTGCCTGATGTCGAGGATGTTTCGAAATATCGGTCCTTGGGGGAAACCATAATGTGTTTACTTCCTCC AGTGGAGAAATGCAGTTTTCCTTGTAGCGTAAGCTTCATGCTGAAGCTACTAAGGGCTGCAATTATGCTAGGGTGTGAAGAATCGGATAGGAACGAACTG ATACGAAGAATCGGTGGACAGCTTGTGGAGGCTACTGTCGAGGATCTTTTGATTCCGACCATGTTTGATGTCGATGTAGTGCATAGACTCGTCGAGGAAT TCGTTAAACATCAACGGAAGGAGCATGAGATTGTGCCTTATGATGAGGAGTTGAAGTTTGGTTCAGATGGCTCAAGGGCTCATGTAGCAAAGTTGGCTGA TGGCTACCTTACTGAATTAGCTAAAGATTCTGACTTGCAGAATCTCTCGAAGTTTCTGAGCTTAGCCGAAATGGTTTCGAGCTTCCCTAGATCATCTCAT GATGGATTATACCGAATCATTGATATGTACCTTAAGGAACATCCAACAATCGGAAAGAGCGAAAAGAAGAGACTTTGCAAGCTGATGGACTGCAAGAAGC TGTCGTCGGAAGCAAGCACGCACGCCGTTCAAAATGAGAGGCTTCCACTGCGCGTCGTGGTTCAAGTCCTCTTCTTCGAGCAGATGAGGCAGTCGGCTTC TTCGTCTCCTACTGGGAGTAGTACGCCGTTTTCAGGCTCGATCACGACATTAGTCCTTGGAGAGTCCCACGGAAGCTCGAGGTCTACCGAGGAGGAATGG GATGATTCTGTGCCTACAACAGCGGAAGAAGACATAGGTCATGATCGTAAGCCTGTCGTTACTAGCAAAACGAAAGGGTTGGCCATGTCGAGGAAGTTGT TCTCGAAGCTATGGTCGAGTAAAGATCGGATCGATGAGATTAGCAGCTCTGAGACGTCAGGGAGTACTCCGGGATCGAAGTTCGTGGATGAAGCGAAATC TATGAAGTCGTCGAGGAGCAGGAGGAATTAA
AA sequence Show only first row Show all	>Lus10019297 pacid=23141364 polypeptide=Lus10019297 locus=Lus10019297.g ID=Lus10019297.BGIv1.0 annot-version=v1.0 MKFMKLGSKPDCFRTQGDNIRYVATELAADIVVTVNDVKFYLHKFPLLSKSSMMQKLVSNSNSNDDEINIHDFPGGPAVFEKCAKFCYGMAVTLNPYNVV AARCASEYLEMYETVEKGNLVYKIEVFLNSSIFRSWKDSIVVLQTTRSFLPRSEELNLVNRCLDSITSKACIDTSMVTWSYTYNRNKDQRKLQISSEVPK DWWVEDLCELPIESYQRVISRIRAKGEAFNNVIGESLHAYALRRLPDVEDVSKYRSLGETIMCLLPPVEKCSFPCSVSFMLKLLRAAIMLGCEESDRNEL IRRIGGQLVEATVEDLLIPTMFDVDVVHRLVEEFVKHQRKEHEIVPYDEELKFGSDGSRAHVAKLADGYLTELAKDSDLQNLSKFLSLAEMVSSFPRSSH DGLYRIIDMYLKEHPTIGKSEKKRLCKLMDCKKLSSEASTHAVQNERLPLRVVVQVLFFEQMRQSASSSPTGSSTPFSGSITTLVLGESHGSSRSTEEEW DDSVPTTAEEDIGHDRKPVVTSKTKGLAMSRKLFSKLWSSKDRIDEISSSETSGSTPGSKFVDEAKSMKSSRSRRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10019297 [exp]	0	1
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	3.3	0.7682
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	11.7	0.7267
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	12.6	0.7440
AT4G34760			SAUR-like auxin-responsive pro...		Lus10041921 [exp]	14.0	0.7068
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	26.6	0.7380
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10014899 [exp]	31.0	0.6866
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	34.9	0.6904
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	36.6	0.7153
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	50.0	0.7152
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10004723 [exp]	51.2	0.6724

Compare expression of checked genes

Lus10019297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.