Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67470 625 / 0 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 526 / 1e-170 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 466 / 9e-150 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G05470 402 / 2e-125 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 379 / 1e-116 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 353 / 4e-108 AFH3 formin 3 (.1.2) AT5G48360 315 / 5e-94 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 301 / 6e-89 ATFH8 formin 8 (.1) AT1G59910 278 / 1e-79 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G07540 254 / 8e-72 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011524 [exp] 1311 / 0 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 843 / 0 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 507 / 3e-163 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 504 / 5e-162 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 410 / 3e-129 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 397 / 2e-124 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 394 / 3e-123 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 392 / 3e-122 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 385 / 8e-119 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054900 [exp] 760 / 0 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 524 / 3e-171 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 518 / 3e-167 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 513 / 1e-166 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 516 / 3e-166 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 419 / 4e-131 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 411 / 3e-128 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 385 / 4e-118 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 380 / 3e-116 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 375 / 2e-115 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10019298 pacid=23141384 polypeptide=Lus10019298 locus=Lus10019298.g ID=Lus10019298.BGIv1.0 annot-version=v1.0 ATGATGAAGAATTCTTATCTTTCTCGCTGCTACTGTTACCTCCTCATTTTAGTTTGTTGTTTTCCGCACAGTTCCGCCTCAATTCCCAGTGTCGGTGGCG GAATCAGCCGGAGGATTCTCCATCAGCCATTGTTCCCGGCGACTTCTTCACCGCCTCCGTCGGGACCGCCGCCGGCGGATACAAGCGCCTCTTTCCCGTT CTTCCCCGAGGTACCTGCGCAGGCTTCTTCTACTCCTCCAGATCAGCAGCAGCAGACGCCTCCGGTTACGAGCTCGGACGCCAATGGAACTCTCCCGATC CCAACGGCTACCACCGCTCAGCAAGCTAAGCCGGTTAAGAACGCCGCGATTGCTGTCTCAGTCGCGCTCGTGACTCTAGGGATGCTCTCCGGGCTTGCGT TCTTCATCTGCCGTCACCGCGCCAAGCACTCGACGAGGAGGGAGTCAGAGAAGTTTGTGGCGGAAGGAGATCAGTCGCGGCGGTTTGATGATGATGAGTT AGTTAGGAATCCGAGGAATCCGAGGAATTCTCTTCGTGCTCCTCCTCCGCCTCCACTGCAGCAGCAGCAGACGTCCAATTTTTTGTACATGGGGACGGTT GAGCCGAGTCGGAGTTTGAGCTCTGAGATGAACGGAACAGCTACAACAACGACGGTATCTGTGTCGACGACTAAGGCCAGCTCGATGAAGAGATCTGATC GGTATAGGCCGAGTCCTGAGCTGCATCCCTTACCGCCATTGCCGAAACCTCCAGTTGCTAGTATCACTCCTTTTGATAAGTATCATCCTCATCATAATCC TCGTCTTTCACGGCCTCTCCAGGCTACTGCTGTTGTTCCGCGACCGGAATTGGAGACCTCTGAATCGCAGACTTCGTCCTCTTCGGGAGATGAAGAGAGT AACGGTACGGCGTTTTACACGCCGGCGGGATCTGCCATGAGTAACGACGACGGATTCTATGCTCCGATTTCCGGTTCACGGCATCGTCACAGTAAAAGTA ACGGCAGTGGCAGGTCATCGAATTTGAAGTCAGGTAACGGCGGTAACGGCTCTTCCTCTGTTCCTCATTCGAAAAGAACTTCTCCGAAATCGAGATTTAC TTCTTCCGTTTCTTCCCCGGAGATGAAACATGTAATCATTCCCTCGATTAAGAAGCCACCGTCGGAAGACAATCCTCCATCGCCTCCGCCGCGAGATGAT GATGATGTTCAGGTAGCGAGTTCGCATCTATCCAACCGGCCGAAATTCGCGGCGCCTCCGCCTCCACCGAATATGGCAATTCTCCAGTCGCTGAACAACA ATCCACCGTGCAAACCCACCGTTCCTCCTCCACCGCCGCCTCCTCCGCCTCCTCCTGCGCCGTCGAGTTCAATTCCAACTCCGAGGAAGGTAGGTAGATC TCTATCGCCAGAGAAAACACGTAGTTCTTCCACGACGTGGACACCGAGTTCGACGGGGAGCTCCAAAACAAATGCAGCCAAATCGGTGGAGAAGAGTACC GGAAGCGGCGGATTAATGTCGTCTGGAAAGATGGATGCAGACGACGAGAATGAAGGGACGAAGCCGAAGCTGAAAGCTCTCCATTGGGACAAAGTCCGGG CAACTTCAGACCGCGCTACGGTGTGGGATCAGCTCAAATCTAGTTCATTCCAATTAAACGAGGACATGATGGAGAGCCTATTTGGATGCAATTCAGCCAA CTCTGCTCAGAAAGAACAACTGCAAAACGCAACCAGGAAATCAGTTCTGCCAGCTCCAGTTGAAAAGGAGATGAGAGTTTTGGATCCAAAAAAGTCACAG AACATAGCCATACTGTTGAGGGCATTGAATGTCACCAAAGATGAAGTCTCTGAAGCTCTTCTCCATGGGAATCCAGAAGGATTAGGAGCTGACCTGTTGG AAACTTTGGTGAAGATGGCTCCAACAAAGGAGGAAGAAATCAAGCTTCGAGACTACAATGGTGATATATCTAAACTCGGCTCTGCAGAAAGATTCCTCAA GGCTATTCTCGACGTCCCATTCGCATTCAAGAGAGTTGAAGCCATGTTATACAGAGCCAATTTCGAAACTGAAGTCTCGTACCTTAAAAGATCTTTCCAA ACTCTAGAGGTGGCAAGTGAAGAACTGAAGAACAGCAGGCTATTTTTCAAGCTCCTGGAAGCTGTTCTAAAGACAGGGAACCGAATGAACGTTGGCACGA ATCGAGGCGATGCCAAGTCATTCAAGCTCGACACGTTACTGAAACTGGTAGACATCAAAGGAACCGACGGGAAAACGACATTGCTCCATTTTGTAGTTCA GGAAATGATCAGATCAGAAGGCGGTGCTCACCCGGAACTAGTTCATGATAACAAACTAGCACCAACAACCATGAAAGATGAAGAATTTCGGAAGCAAGGG TTGGTGGTTGTATCCTCTCTAGGTAGAGAACTCATCAATGTGAAAAAGGCAGCAGGGATGGACTCGGACGTACTAAGCAGCTACGTAGCCAAGCTCGAAA CCGGACTCGAAAAAGTTCGGTCAGTTCTGCAGCATCAGAAAACGGGGAACTTCTTCCAATCGATGAAGCTGTTCCTCGGAGACGCGGAGGATGAGATCGA GACCATCAAAGTGGCCGAAAGTCGAGCATTAGCTCTGGTGAAAGAGGTGACAGAGTATTTCCACGGGGATACAGCGAAAGAGGAAGCTCACCCTTTGAGG ATCTTCATGGTTGTGAGGGACTTTCTGTCAATACTTGATCATGTGTGTAAGGAAGTGGGACAGATGCAGGATCGGACACTTGTGGGATCTGCTCGGTCTT TCAGGATCGCTCCAAGCGCTTCGTTGCCCGTGTTGAATCGGTACAATGTGAGGCAGGATCGTATGAGTTCTGACGACGACAGTTCTTCTTCGCCTTGA
AA sequence Show only first row Show all	>Lus10019298 pacid=23141384 polypeptide=Lus10019298 locus=Lus10019298.g ID=Lus10019298.BGIv1.0 annot-version=v1.0 MMKNSYLSRCYCYLLILVCCFPHSSASIPSVGGGISRRILHQPLFPATSSPPPSGPPPADTSASFPFFPEVPAQASSTPPDQQQQTPPVTSSDANGTLPI PTATTAQQAKPVKNAAIAVSVALVTLGMLSGLAFFICRHRAKHSTRRESEKFVAEGDQSRRFDDDELVRNPRNPRNSLRAPPPPPLQQQQTSNFLYMGTV EPSRSLSSEMNGTATTTTVSVSTTKASSMKRSDRYRPSPELHPLPPLPKPPVASITPFDKYHPHHNPRLSRPLQATAVVPRPELETSESQTSSSSGDEES NGTAFYTPAGSAMSNDDGFYAPISGSRHRHSKSNGSGRSSNLKSGNGGNGSSSVPHSKRTSPKSRFTSSVSSPEMKHVIIPSIKKPPSEDNPPSPPPRDD DDVQVASSHLSNRPKFAAPPPPPNMAILQSLNNNPPCKPTVPPPPPPPPPPPAPSSSIPTPRKVGRSLSPEKTRSSSTTWTPSSTGSSKTNAAKSVEKST GSGGLMSSGKMDADDENEGTKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSANSAQKEQLQNATRKSVLPAPVEKEMRVLDPKKSQ NIAILLRALNVTKDEVSEALLHGNPEGLGADLLETLVKMAPTKEEEIKLRDYNGDISKLGSAERFLKAILDVPFAFKRVEAMLYRANFETEVSYLKRSFQ TLEVASEELKNSRLFFKLLEAVLKTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGTDGKTTLLHFVVQEMIRSEGGAHPELVHDNKLAPTTMKDEEFRKQG LVVVSSLGRELINVKKAAGMDSDVLSSYVAKLETGLEKVRSVLQHQKTGNFFQSMKLFLGDAEDEIETIKVAESRALALVKEVTEYFHGDTAKEEAHPLR IFMVVRDFLSILDHVCKEVGQMQDRTLVGSARSFRIAPSASLPVLNRYNVRQDRMSSDDDSSSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	0	1
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	1.0	0.9316
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	2.4	0.8726
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	3.0	0.8846
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	3.2	0.8852
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	4.0	0.8817
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	7.1	0.8774
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10021582 [exp]	8.4	0.8523
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	9.4	0.8704
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	10.0	0.8469
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	10.5	0.8605

Compare expression of checked genes

Lus10019298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.