Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67480 445 / 2e-156 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT4G37610 390 / 7e-135 BT5 BTB and TAZ domain protein 5 (.1) AT1G05690 326 / 7e-110 BT3 BTB and TAZ domain protein 3 (.1) AT5G63160 226 / 6e-71 BT1 BTB and TAZ domain protein 1 (.1) AT3G48360 222 / 4e-69 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT1G79000 82 / 2e-16 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT1G16710 71 / 9e-13 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G12980 60 / 2e-09 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1) AT1G55970 54 / 9e-08 HAG4, HAG04, HAC6, HAC04, HAC4 ,ATHPCAT2 HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 4, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 04, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 6, histone acetyltransferase of the CBP family 4 (.1) AT4G08455 43 / 0.0002 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011523 [exp] 673 / 0 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10025196 [exp] 469 / 1e-165 AT5G67480 425 / 9e-149 BTB and TAZ domain protein 4 (.1.2) Lus10042082 [exp] 242 / 4e-77 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10018087 [exp] 236 / 9e-75 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10013670 [exp] 229 / 3e-72 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10033038 [exp] 124 / 2e-33 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10034780 [exp] 80 / 9e-16 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033321 [exp] 79 / 2e-15 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033319 [exp] 77 / 1e-14 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G055100 [exp] 455 / 8e-160 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.017G009700 [exp] 377 / 4e-129 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.007G140400 [exp] 375 / 3e-128 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.015G087700 [exp] 258 / 2e-83 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.012G091400 [exp] 249 / 6e-80 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.014G000500 [exp] 79 / 1e-15 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.007G003400 [exp] 78 / 3e-15 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.004G104201 [exp] 58 / 1e-08 AT1G79000 860 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02135 [flax] [poplar] zf-TAZ TAZ zinc finger CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10019299 pacid=23141312 polypeptide=Lus10019299 locus=Lus10019299.g ID=Lus10019299.BGIv1.0 annot-version=v1.0 ATGGGAGAAACGGCCGATTGGATCGCCGGCGGCGGCGAGAAAAACCCATCCACGGTTGGAAAAACCTGTCCCGATCCACCCCCTATCTCCAGCTACCGTC GGAGAACAACCTCTCTGGGGACAGCGGCGGAGGCGAGCAATATTGTATCCGTTCCTAGAGCGACGAGGGATTTATGGGAGCGGTTGTTCAACGAAGGTTA CAGATCGGACGTTGAGATCCATACCAGTAATGGTGATCCAATCTTCGCTCACGCCTCTGTTCTCGGCATGGCTTCTCCGGTGCTTAGAGGGATGTTGAAG CAGGCCAAAAGCCATAGCGACGGCCGGCGTTCGATCTCCGTCAACGGCGTGCCACATGACGCCGTTCGTGTCTTCGTCAGATTCCTCTACTCATCCTGTT ACGAGAAGGAAGAGATGGAGGTGTTCGTGCTGCATCTCCTGGTCCTATCCCACGTATTCGTGGTGCCGAAGCTGAAACGAATCTGCATCCAACGAGTCGA GCACGGGTATCTAACCGCGGAGAACGTGGTCGACATTTTGCAGCTGGCATTGCTTTGCGACGCCCCGAGGCTGAGCTTGATCTGCCATCGAATGATCATC AAGGAGTTCAAGGAGATCTCATGCACAGAGGGATGGCAAGCCATGAAGGAGAGCCATCCGGTACTCGAGAAGGAACTCCTCGAGTCCATCATTGAAGCCG ACAATAGGGAGAAAGAAAGAATTAGAAGAAGCAAAGAGAGGAAGATATACTTGCAACTGTACGAGGCAATGGAGGCACTAGTCCACATATGCAGAGACGG GTGTCGGACGATCGGACCGCACGACAAGGAATTCGAGCGGAACCAAGAGCCATGTAACTACGGTGCTTGCCGCGGTCTGGAGCAATTGGTCCGACATTTT CGAGGATGCAAGCAAAGAGTCCCAGGCGGATGCAGCCATTGCAAGAGGATGTGGCAGTTGCTTGAGCTCCACTCGCGACTTTGTGTCGATTCGAGTCTCT GTCGGGTTCCTCTATGCAGGAATTTCAAGGAGAGGACTAGGAAGCAGAGCAAGAAGGAGGAGACAAGGTGGAGAATGCTGGTGAAGAACATACTTAGAGC CAAAGTTGTCGGTGGATCACCGTTCTTCTTGTCGGCGCTGGTTTCGTCCTCCGTTTCGGTATAG
AA sequence Show only first row Show all	>Lus10019299 pacid=23141312 polypeptide=Lus10019299 locus=Lus10019299.g ID=Lus10019299.BGIv1.0 annot-version=v1.0 MGETADWIAGGGEKNPSTVGKTCPDPPPISSYRRRTTSLGTAAEASNIVSVPRATRDLWERLFNEGYRSDVEIHTSNGDPIFAHASVLGMASPVLRGMLK QAKSHSDGRRSISVNGVPHDAVRVFVRFLYSSCYEKEEMEVFVLHLLVLSHVFVVPKLKRICIQRVEHGYLTAENVVDILQLALLCDAPRLSLICHRMII KEFKEISCTEGWQAMKESHPVLEKELLESIIEADNREKERIRRSKERKIYLQLYEAMEALVHICRDGCRTIGPHDKEFERNQEPCNYGACRGLEQLVRHF RGCKQRVPGGCSHCKRMWQLLELHSRLCVDSSLCRVPLCRNFKERTRKQSKKEETRWRMLVKNILRAKVVGGSPFFLSALVSSSVSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	0	1
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	2.0	0.9796
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	2.4	0.9751
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10030070 [exp]	2.8	0.9624
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	4.6	0.9636
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	5.5	0.9641
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	8.0	0.9539
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	8.1	0.9645
AT2G39950			unknown protein		Lus10040223 [exp]	9.0	0.9450
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	9.5	0.9653
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	10.6	0.9652

Compare expression of checked genes

Lus10019299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.