Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67350 41 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010401 [exp] 89 / 1e-19 AT5G67350 69 / 5e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145100 [exp] 60 / 6e-10 AT5G67350 86 / 7e-19 unknown protein Potri.007G051800 [exp] 60 / 7e-10 AT5G67350 92 / 6e-21 unknown protein Potri.007G042600 [exp] 40 / 0.0008 AT5G66800 121 / 4e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019301 pacid=23141419 polypeptide=Lus10019301 locus=Lus10019301.g ID=Lus10019301.BGIv1.0 annot-version=v1.0 ATGGGTACGGAGGAGAAATGGGTTCGGAGCAGCTCCGAGGGAGATGAGGATGAATCGCTCTCCCTCTCCGATTTGCCTGTGGATTTACTTCCGCAAGAAT CGGCTAACGAGGAGGTGACACCTGTCTCGGAGGATTTCGATTTCGGGAGGGTGTTGTTGTCGGGTTGCGGGTCGGTCGGATCCAAGTCGGAAAGCTCCGA GATGTGCGCCGCAGATGATATCTTCTTCAAAGGACGGATTCTGCCCTTCCGTAGTGATTCGTTGGTTTCTCGGTCGGAATCGATGGACCGGAGCTCTTCT TCTGGCGGCGGGTTCGCCAGTTTTAGCAGCAGGAGTAGTAGCTCCGACTCCAACAGTCATAACTCCACCACCTCCTCCTCTTCGTCGGTGTCGTCAAGTA ATACTAAAAGCTCTTCCTCCTCCTCCGGCGGCGGAAAGACTCGGGTTTTAAACCGGTTCCACACGTATCCGAGTCCGAAGCCGCAGGTAATCAAAACACA CAACGTAAATCCTCCGCCGGCGGCGAGGAGTAGGTCGTCGATTTGGGGGAATCTGAGACTGGGTTTAGTCCGTGCTCCGGGAATCGAGTTCCAACCGGAT CTGAAATCCAGAAGCACCGGCAGCGGCAGCAGAACAGAGAATCAGAGCACCGGAAAAAACCCGCCTCCCGAATGTAAGAGAACTAGTAGCGGGAGGTTGT TATTCAGCGGCTGCGACTGCGGGATCGGAGGAGTGATTCAGCCGGCGACGATGGTCAGAGAAGAACATTTTCGGAAAGATTCCGGCAAGGAGGAGATGAA GCCGCCTCCGCCGGCGGCGGCGGAGATGAAGAATCAAGAGAGAGGAAAGGAAGAGACGTCACGTCACCGGACGGTGGAGTGGATCATAAAGGAGCTGTCA CATGGGAGCTTTACGGAGGAAAGGAATTCAATTAGCTCCGCGTGA
AA sequence Show only first row Show all	>Lus10019301 pacid=23141419 polypeptide=Lus10019301 locus=Lus10019301.g ID=Lus10019301.BGIv1.0 annot-version=v1.0 MGTEEKWVRSSSEGDEDESLSLSDLPVDLLPQESANEEVTPVSEDFDFGRVLLSGCGSVGSKSESSEMCAADDIFFKGRILPFRSDSLVSRSESMDRSSS SGGGFASFSSRSSSSDSNSHNSTTSSSSSVSSSNTKSSSSSSGGGKTRVLNRFHTYPSPKPQVIKTHNVNPPPAARSRSSIWGNLRLGLVRAPGIEFQPD LKSRSTGSGSRTENQSTGKNPPPECKRTSSGRLLFSGCDCGIGGVIQPATMVREEHFRKDSGKEEMKPPPPAAAEMKNQERGKEETSRHRTVEWIIKELS HGSFTEERNSISSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67350			unknown protein		Lus10019301 [exp]	0	1
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	3.2	0.8634
AT3G55760			unknown protein		Lus10021897 [exp]	5.7	0.8679
AT3G57120			Protein kinase superfamily pro...		Lus10021451 [exp]	6.0	0.8448
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10038424 [exp]	10.0	0.8464
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	11.4	0.8525
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	13.9	0.8381
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	17.0	0.8483
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	24.5	0.8392
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	25.9	0.8411
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10032335 [exp]	26.5	0.8235

Compare expression of checked genes

Lus10019301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.