Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33920 439 / 3e-154 Protein phosphatase 2C family protein (.1) AT5G66080 352 / 7e-120 Protein phosphatase 2C family protein (.1) AT3G51370 349 / 6e-119 Protein phosphatase 2C family protein (.1.2) AT5G06750 343 / 2e-116 Protein phosphatase 2C family protein (.1.2.3) AT3G55050 341 / 8e-116 Protein phosphatase 2C family protein (.1.2) AT3G12620 339 / 6e-115 Protein phosphatase 2C family protein (.1.2) AT5G02760 328 / 9e-111 Protein phosphatase 2C family protein (.1) AT3G17090 327 / 4e-110 Protein phosphatase 2C family protein (.1.2) AT4G38520 327 / 4e-110 Protein phosphatase 2C family protein (.1.2) AT3G16560 126 / 3e-32 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011521 [exp] 682 / 0 AT4G33920 483 / 2e-171 Protein phosphatase 2C family protein (.1) Lus10013896 [exp] 465 / 1e-164 AT4G33920 554 / 0.0 Protein phosphatase 2C family protein (.1) Lus10002110 [exp] 442 / 4e-155 AT4G33920 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030302 [exp] 355 / 3e-121 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 353 / 2e-120 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 347 / 9e-118 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 345 / 3e-117 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 344 / 2e-116 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10004170 [exp] 343 / 3e-116 AT5G06750 518 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297200 [exp] 499 / 5e-178 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.009G091600 [exp] 479 / 4e-170 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G051900 [exp] 461 / 4e-163 AT4G33920 460 / 1e-162 Protein phosphatase 2C family protein (.1) Potri.016G045600 [exp] 370 / 5e-127 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.006G192600 [exp] 358 / 4e-122 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.010G214700 [exp] 343 / 1e-116 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 343 / 3e-116 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 340 / 3e-115 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 340 / 5e-115 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 337 / 9e-114 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10019302 pacid=23141365 polypeptide=Lus10019302 locus=Lus10019302.g ID=Lus10019302.BGIv1.0 annot-version=v1.0 ATGTTGCTGGACTGCAGTTGCTTCGGCGGCCACGGCGGCGGCCACGGAACCGGCGACGAGCTTCTTTGGCATGTTGGCCTAAAGCGACACGCCTCAGGTG ATTTCTCGTTTGCAATGGTTCAAGCGAATTCCTCGCTGGAAGACCAGGGTCAGGTTTTCACTTCACCTTCCGCTACTTACATCGGCGTCTACGACGGCCA CGGCGGCCCCGAAGCCGCCCGCTTCCTCGCCACCCGTCTCTTCCCCTTCATCCACGATTTTGCGATGGAGCAAGGCGGACTATCGGCGGAGGTGATAAGG AAGGCGTTCTCGGCGACGGAGGAGGAGTTCCTCCAGATGGTGAAGCGATCGTGGATGAACCAGCCGCAGATTGCGTCCGTTGGATCTTGTTGTCTTTTAG GGATATTGTCCGAGGATTTGCTGTACGTGGCGAATCTCGGTGATTCGAGAGCGGTGATGGGGAAGAGAGCTTCTCCGGCGACGGCTGCGGCGGAGCGATT GACCGTCGATCATAATGTTGCTGTTGAGGAGGTTAGAAACGAAGTTTTGGCTCTTCATCCCGATGATTCTCACATCGTTCTTTATACCCGTGGTGTTTGG CGGATTAAGGGCATAATCCAGGTTTCAAGATCGATAGGGGATGTGTATCTGAAGAAGCCAGAGATGAGCAGAGATCCACTCTTCCAACAATTCGGCACAC CGGTTCCTTTAAAAAGAGCAGTAATGTCAGCAGAACCATCGATAACGATTCGAAGGCTAAACCCAGACGACATGTTCTTGATACTCGCAACAGATGGTCT ATGGGAGCAGCTAACCGATGAAGCAGCTGTAGATATGGTTTTCAAGAATCCAAGAGCCGGGATAGCGAGGAGGCTGGTGAAGGCAGCGTTGCAGGTGGCT GCGAAGAAAAGGGAGATGATCTATAATGACATAACGAAGATCGAAAGAGGGGCGAGACGGTATTTCCACGACGATATCACTGTGATCGTTATGTATCTCG ATCATCATGGTGCGGCAGGGAGAGGGAAATCAAGCTCCGTCGATTGCGTAAGTTCTCCTGCTGATATCTACTCTTCTTCTAATGCAAGCAGCAAAGTGCA TATTTAA
AA sequence Show only first row Show all	>Lus10019302 pacid=23141365 polypeptide=Lus10019302 locus=Lus10019302.g ID=Lus10019302.BGIv1.0 annot-version=v1.0 MLLDCSCFGGHGGGHGTGDELLWHVGLKRHASGDFSFAMVQANSSLEDQGQVFTSPSATYIGVYDGHGGPEAARFLATRLFPFIHDFAMEQGGLSAEVIR KAFSATEEEFLQMVKRSWMNQPQIASVGSCCLLGILSEDLLYVANLGDSRAVMGKRASPATAAAERLTVDHNVAVEEVRNEVLALHPDDSHIVLYTRGVW RIKGIIQVSRSIGDVYLKKPEMSRDPLFQQFGTPVPLKRAVMSAEPSITIRRLNPDDMFLILATDGLWEQLTDEAAVDMVFKNPRAGIARRLVKAALQVA AKKREMIYNDITKIERGARRYFHDDITVIVMYLDHHGAAGRGKSSSVDCVSSPADIYSSSNASSKVHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33920			Protein phosphatase 2C family ...		Lus10019302 [exp]	0	1
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	1.7	0.8627
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	2.8	0.8823
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	3.5	0.8515
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	7.9	0.8656
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	16.2	0.8292
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	21.8	0.8413
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	22.7	0.8193
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	24.0	0.8379
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10004881 [exp]	25.0	0.7539
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	26.2	0.8239

Compare expression of checked genes

Lus10019302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.