Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37470 409 / 7e-146 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 286 / 3e-97 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 213 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014859 [exp] 432 / 1e-154 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 417 / 1e-148 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 323 / 7e-112 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 284 / 2e-96 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 211 / 1e-67 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10000054 [exp] 201 / 2e-65 AT4G37470 192 / 7e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 203 / 2e-64 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 187 / 5e-58 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) Lus10015633 [exp] 181 / 1e-57 AT4G37470 188 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052000 [exp] 417 / 1e-148 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G145000 [exp] 414 / 8e-148 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 295 / 6e-101 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 290 / 1e-98 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 232 / 5e-76 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 202 / 5e-64 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 42 / 0.0003 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019303 pacid=23141430 polypeptide=Lus10019303 locus=Lus10019303.g ID=Lus10019303.BGIv1.0 annot-version=v1.0 ATGGGACTGGTACTCCGATCAGCACACAACGTCAAAATCCTGGGCGCCGGCGACCAGGTCATCGTCCTCGCTCACGGCTTCGGCACCGACCAGTCCGTCT GGAAGCACCTAGTCCCTCACTTGCTCGACGATTTCAAAGTCGTCGTCTACGACAACATGGGTTCCGGCTCCACAAACCCCGATTTCTTCGACTTCCGCCG CTACTCCGGCCTCGAAGGGTACGCCTACGACCTCCTGGCCATCCTCGACGACCTCCATGTCAGTTCCTGCATCTACGTCGGCCACTCCGTGTCCGCCATG ATCGGCGCCCTCGCCTCCGTCAACCGCCCCGATCTCTTCCTCAAGCTCGTCCTCCTCTCCAGCTCCCCTAGGTATTTGAACGATGTGGATTACTTCGGGG GACTCGAGCAGGAGGATTTAAACCAGCTGTTCGAGGCGATGGGGTCGAATTACAAGGCGTGGTGCGACGGATTCGCGCCAATGTTGGTCGGCGGGGACAT GGAGTCGGCGGCAGTGCAGGAATTCAGCCGGACGCTGTTCAATATGCGGCCGGATGTAGCTCTGAGCGTGGCGCGTGTGATTTTCCAGAGCGATATGAGG AGCATTCTTCCCACGGTTAAAGTCCCTTGCCATGTACTACAGAGCACGAAGGATATGGCGGTCCCCGTGAACGTGTCGGAGTATTTGCACCGGTGTCTCG GCGGGGATTCCATCGTCGAGGTCATGCCGTCGGAGGGCCATTTGCCGCAGCTGAGCTCGCCGGATATCGTTGTTCCGGTGCTTCTCCGGCATATCCGGTG TGATGTTGTTCGACGAGATTAA
AA sequence Show only first row Show all	>Lus10019303 pacid=23141430 polypeptide=Lus10019303 locus=Lus10019303.g ID=Lus10019303.BGIv1.0 annot-version=v1.0 MGLVLRSAHNVKILGAGDQVIVLAHGFGTDQSVWKHLVPHLLDDFKVVVYDNMGSGSTNPDFFDFRRYSGLEGYAYDLLAILDDLHVSSCIYVGHSVSAM IGALASVNRPDLFLKLVLLSSSPRYLNDVDYFGGLEQEDLNQLFEAMGSNYKAWCDGFAPMLVGGDMESAAVQEFSRTLFNMRPDVALSVARVIFQSDMR SILPTVKVPCHVLQSTKDMAVPVNVSEYLHRCLGGDSIVEVMPSEGHLPQLSSPDIVVPVLLRHIRCDVVRRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10019303 [exp]	0	1
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10021767 [exp]	41.5	0.8305
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	53.0	0.8155
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	64.0	0.8180
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10040219 [exp]	68.0	0.8207
					Lus10028488 [exp]	102.8	0.8069
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10009593 [exp]	107.2	0.8033
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10040938 [exp]	119.8	0.7710
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10041732 [exp]	183.0	0.7750

Compare expression of checked genes

Lus10019303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.