Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	No hit found
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019304 pacid=23141328 polypeptide=Lus10019304 locus=Lus10019304.g ID=Lus10019304.BGIv1.0 annot-version=v1.0 ATGGAGCGCAAGAGTATGCTTCTTCTCGCATTGGTGGCCGTAATCGTCGCCGGAGTTGGCGGCCAAGCTCCCGCCGCCACTCCTACCTCCACTCCCACCG TCCCCGCCGCTGCACCATCCACCAACTCTTCATCCTCAGCTCCCACCGCATCTCCACCAACAGCCGCTGCCCCGACCTCCACTCCACCAGCAGCTGCACC CGTCGCCACTCCACCGGCAGCCACCGTCGCTCCAGTAAGCTCCCCCCCTACAGCTGCTGCTCCAGTCAGCTCCCCACCAACAGCAACACCTGCCCCCCCT CCACCCGCCCCCCACCCCGCCCCCAGCTCCCGTCGCCGCTACTCCTCCCGCAGCATCTCCTCCCGCCGCTGA
AA sequence Show only first row Show all	>Lus10019304 pacid=23141328 polypeptide=Lus10019304 locus=Lus10019304.g ID=Lus10019304.BGIv1.0 annot-version=v1.0 MERKSMLLLALVAVIVAGVGGQAPAATPTSTPTVPAAAPSTNSSSSAPTASPPTAAAPTSTPPAAAPVATPPAATVAPVSSPPTAAAPVSSPPTATPAPP PPAPHPAPSSRRRYSSRSISSRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019304 [exp]	0	1
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10005370 [exp]	3.9	0.9214
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	4.2	0.9111
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	4.5	0.9310
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	5.1	0.9307
AT4G24330			Protein of unknown function (D...		Lus10019958 [exp]	5.6	0.8708
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	6.2	0.8995
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	6.9	0.9273
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	7.4	0.9073
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	8.1	0.9177
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	11.0	0.9153

Compare expression of checked genes

Lus10019304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.