Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37440 69 / 2e-13 unknown protein AT3G50040 65 / 5e-12 unknown protein AT3G59670 56 / 1e-08 unknown protein AT2G23140 42 / 0.0003 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014864 [exp] 112 / 4e-28 AT4G37440 155 / 2e-42 unknown protein Lus10001409 [exp] 110 / 2e-27 AT4G37440 155 / 2e-42 unknown protein Lus10008349 [exp] 63 / 5e-11 AT3G59670 277 / 1e-86 unknown protein Lus10027104 [exp] 61 / 1e-10 AT3G59670 244 / 1e-75 unknown protein Lus10011514 [exp] 57 / 3e-09 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 57 / 3e-09 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 51 / 5e-07 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10032023 [exp] 47 / 5e-06 AT2G23140 309 / 1e-98 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011519 [exp] 0 / 1 AT4G37440 134 / 8e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051100 [exp] 98 / 3e-23 AT3G59670 178 / 4e-50 unknown protein Potri.005G144800 [exp] 93 / 2e-21 AT3G59670 181 / 6e-51 unknown protein Potri.013G127100 [exp] 83 / 6e-18 AT3G59670 377 / 2e-125 unknown protein Potri.007G051000 [exp] 50 / 1e-06 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 49 / 2e-06 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G185900 [exp] 41 / 0.0007 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019305 pacid=23141405 polypeptide=Lus10019305 locus=Lus10019305.g ID=Lus10019305.BGIv1.0 annot-version=v1.0 ATGAAGATTCAGGAAAATGCCACTGTACTTCTGCACTTGTCCATCAACGAGAACAAGCAAACGGCCATTGTTGATGCAGAAACGATCGATTCATTAATTT ATGTCCTTGAAACCAGGAGTGACTTCCAGCCTAGTGATGATGAGGTTGAATCGATCGTGGATGACTATGCACCTCCATTGTTTGGTGGCTATCAATCGAG GAGGAAGGGGTTGACAGAACACTGGAAGAAGTTCATACATTCTGTTATGTGGCGCTGTAAGTGGATAGAATTGAAGCTTAATGAGCTTCGGTTGCAGGCA TTGAAGAACGATGGTGATCTTGCAGAAATTGGAAAGGAACTTCACGAGATGGAAGGTTTCGAATGGAAGTCGAGACCGTTTTCTTGCTCCATCCCAAGGA ACAGAGTCATAAAGAGAAAGAAAAGAAAGAGATACGAAGAGATTAGTGATGCACCACCATTCATGCTGCAGCATCACCTCCTTTCATATCTCGGTATGAT TTTTGTATTGAAGGGAAAGATAATAACTTTACCTGCATTTTTCTATGAACCAGAGATGAAGAAGATAGCAGCCAATAACGGTCATCCCCCTCTTCAAGGT AAGATTCTCAGAGATGGTGAAATGTGTCAGCATTTTGGTACGGATGGGAGTGTCCAGATTCCAAACGTTTTGATAGCATGGAAGAAGAAATCCTTACAAA GATCGAAGCTTTGCATTCGAGAGTTCGCACGTCGAGGTCACGAATCGATGTGCTGGTGA
AA sequence Show only first row Show all	>Lus10019305 pacid=23141405 polypeptide=Lus10019305 locus=Lus10019305.g ID=Lus10019305.BGIv1.0 annot-version=v1.0 MKIQENATVLLHLSINENKQTAIVDAETIDSLIYVLETRSDFQPSDDEVESIVDDYAPPLFGGYQSRRKGLTEHWKKFIHSVMWRCKWIELKLNELRLQA LKNDGDLAEIGKELHEMEGFEWKSRPFSCSIPRNRVIKRKKRKRYEEISDAPPFMLQHHLLSYLGMIFVLKGKIITLPAFFYEPEMKKIAANNGHPPLQG KILRDGEMCQHFGTDGSVQIPNVLIAWKKKSLQRSKLCIREFARRGHESMCW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37440			unknown protein		Lus10019305 [exp]	0	1
AT2G23140			RING/U-box superfamily protein...		Lus10019306 [exp]	2.6	0.7256
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	3.7	0.7865
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	4.0	0.7476
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	13.2	0.7857
AT1G05820		ATSPPL5	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10001154 [exp]	16.9	0.6960
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	22.2	0.7483
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	30.7	0.7352
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	32.2	0.7047
AT4G18260			Cytochrome b561/ferric reducta...		Lus10042834 [exp]	33.4	0.6577
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	36.7	0.6240

Compare expression of checked genes

Lus10019305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.