Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23140 175 / 2e-50 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 149 / 1e-41 ARM repeat superfamily protein (.1) AT3G54790 99 / 7e-24 ARM repeat superfamily protein (.1.2) AT1G23030 77 / 3e-16 PUB11 ARM repeat superfamily protein (.1) AT3G46510 77 / 4e-16 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 76 / 6e-16 ARM repeat superfamily protein (.1.2) AT5G42340 75 / 2e-15 PUB15 Plant U-Box 15 (.1) AT2G28830 73 / 9e-15 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 72 / 2e-14 ATPUB14 plant U-box 14 (.1) AT1G24330 72 / 2e-14 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011514 [exp] 239 / 8e-73 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 234 / 4e-71 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 184 / 3e-54 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 107 / 1e-26 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 107 / 2e-26 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10043471 [exp] 83 / 5e-18 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 82 / 7e-18 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10037970 [exp] 77 / 4e-16 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10038699 [exp] 77 / 4e-16 AT3G54850 599 / 0.0 plant U-box 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051000 [exp] 207 / 3e-62 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 201 / 1e-59 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 113 / 8e-29 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 107 / 1e-26 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G009900 [exp] 82 / 6e-18 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 79 / 9e-17 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 78 / 2e-16 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.008G035700 [exp] 77 / 3e-16 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.008G128600 [exp] 76 / 7e-16 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.009G165900 [exp] 75 / 1e-15 AT5G42340 671 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10019306 pacid=23141423 polypeptide=Lus10019306 locus=Lus10019306.g ID=Lus10019306.BGIv1.0 annot-version=v1.0 ATGTGGGGTCTGAGTACAAGTGGAGTTATAAGTTACAACACACACGGACCCCGCTTCCGCCTTTATAAGATTCGAAACTTGGGTCTGGATATTGCTGAGC TCTTGAAGTCTGACAATGAACATCTACCTGAACAATCGAGTTCATCATCGTCATCTACGGAGTACTGCATACAGAAGCTTGAGAACTTGGGACTGGAAGA AACGTCATTGACTGTTGAGGCGGCCATAAAGGATCGAGTGGAAGGTATTGGAACCGACGCTGATATCCTAGCTGAAATTGCTGTCAGTTTGAGCTTGAGA ACCAATCTGGAGATTCTGATAGAACCAGTGGCACTCGAGAATTTGAAGGAAGCTGCTGACCAAGCTGAAAGAAGTGAGGAAGTTGAGTTATTTGATCAAC TGATTGGTCTGGTCACCAGGATGCATGATCAGCTGATTATTCGAGTGCAAAAATTCAAAACAAGTAGCCTTGCTCCGATACCACCACCTGATTTCTGCTG TCCTCTATCGCTTGAGTTGATGAAAGATCCAGTAAATGTGGCATCTGGACAGACCTATGAACGGTCATTTATCAAAAGCTGGATCGAACTTGGCCTAACA GTATGTCCCAAGACACGGCATGTCCTTGGACACTTTTATGATCACGAATTATACTGTCAAGGCCTTGATTGCTAA
AA sequence Show only first row Show all	>Lus10019306 pacid=23141423 polypeptide=Lus10019306 locus=Lus10019306.g ID=Lus10019306.BGIv1.0 annot-version=v1.0 MWGLSTSGVISYNTHGPRFRLYKIRNLGLDIAELLKSDNEHLPEQSSSSSSSTEYCIQKLENLGLEETSLTVEAAIKDRVEGIGTDADILAEIAVSLSLR TNLEILIEPVALENLKEAADQAERSEEVELFDQLIGLVTRMHDQLIIRVQKFKTSSLAPIPPPDFCCPLSLELMKDPVNVASGQTYERSFIKSWIELGLT VCPKTRHVLGHFYDHELYCQGLDC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23140			RING/U-box superfamily protein...		Lus10019306 [exp]	0	1
AT4G37440			unknown protein		Lus10019305 [exp]	2.6	0.7256
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020148 [exp]	6.9	0.7122
AT5G36930			Disease resistance protein (TI...		Lus10008415 [exp]	11.5	0.6062
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020147 [exp]	15.3	0.6485
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10040202 [exp]	18.1	0.6744
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	19.9	0.6916
					Lus10015577 [exp]	22.2	0.6331
					Lus10042413 [exp]	22.4	0.6306
					Lus10022574 [exp]	24.3	0.6630
					Lus10013650 [exp]	42.3	0.6286

Compare expression of checked genes

Lus10019306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.