Plant FIBer expression Database

Lus10019307 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64550 544 / 0 loricrin-related (.1)
AT5G09670 539 / 0 loricrin-related (.1.2)
AT1G64140 392 / 2e-128 unknown protein
AT4G12020 211 / 8e-58 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011515
[exp]
887 / 0 AT5G64550 652 / 0.0 loricrin-related (.1)
Lus10032329
[exp]
401 / 8e-132 AT1G64140 690 / 0.0 unknown protein
Lus10024712
[exp]
207 / 4e-62 AT1G64140 298 / 2e-97 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G023300
[exp]
650 / 0 AT5G64550 716 / 0.0 loricrin-related (.1)
Potri.001G206600
[exp]
608 / 0 AT5G64550 675 / 0.0 loricrin-related (.1)
Potri.003G134200
[exp]
389 / 4e-127 AT1G64140 690 / 0.0 unknown protein
Potri.001G097200
[exp]
389 / 8e-127 AT1G64140 718 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10019307 pacid=23141425 polypeptide=Lus10019307 locus=Lus10019307.g ID=Lus10019307.BGIv1.0 annot-version=v1.0
ATGGCTCTCAACAGCAATGAACATGTGAAGAATGACACCACCCTGCGCTTGAACTTTCTTGGCTACCAAGGAAACGGTACCTCCGCAAGTTTTAGTGGAG
GCAATCGAAGCAATCTCGATATTGATCTTGGGAATGGCACGGACGATGGATGCAAATTGGTGCTCGGTTTAGGTCCTTACAACAATGTCGGAGCGGTTAG
TAGCAGCAGCAGCAAGCCAAAGGGCTCTCTTGCCTCTGGTGTATCGTGTCGTCAGGGTTTGTTCAGCGAAGGTGATTCCATCTTAAAGCTCGGTCTTTCC
GGAGTAGCTAATGATAACTCGCTGAGCGGCGGACTTGATAGTTCGGTTGTTACGCGGACTAATCCAAAAATACCTATTGTAGATGAGGGTTCCACCACGG
CGAAGAAATCCGGTGGATACATGCCTTCGCTTCTTTTGGCTCCACGAATGGACTTTCCTAAATTTCCACCACAGGCGGAAAGTAACGATTTCGGAACCAA
AATTACTCATTCTTCTGAGTTGGAACCGAGTTACGAGCCATCTGCTACCACAGATTTCTCAATGAGCTCAGCCTCTGAGCAGGCAACTACGACAGCAACA
TCTGGAAGCCAGCGTTCCAACAATCCGAAGAAATGCAAATTCGCCGGATGTTCCAAGGGAGGGCGTGGTGCGTCGGGGCTATGCATTGGCCACGGCGGGG
GGCAAAGATGTCAAAAGCACGGATGCAATAAGGGAGCCGAGAGCCGGACAGCGTATTGTAAGGCACATGGCGGCGGAAGGAGATGCGATTACTTGGGCTG
TACGAAAAGTGCGGAGGGAAAAACTGACTTTTGCATCGCACATGGAGGAGGGAGAAGGTGCGGATACGATGGAGGGTGCACGAAAGCCGCGAGAGGGAAG
TCTGGATTGTGCATTCGACACGGTGGTGGGAAAAGGTGTAAAGTCAACGACTGCACGAGAAGCGCAGAAGGACATGCCGGTTTGTGCATTTCGCATGGTG
GGGGGAGACGGTGTCAGCACAAGGAATGTTCGAAAGGCGCTCAAGGGAGTACGAAGTTTTGCAAAGCTCACGGTGGCGGAAAACGTTGCGTGTTTGCCGA
ATGCACGAAAGGAGCGGAAGGGAGTACGCCGTTGTGTAAGGCTCACGGCGGAGGGAAGCGATGCTTGTTTGATGGTGGCGGGATTTGTCCCAAGAGTGTT
CATGGAGGGACGAATTTTTGTGTGGCGCACGGTGGTGGGAAGAGATGCGTGGTCCCTGGTTGCACGAAGAGTGCACGGGGGAGGACCGATAGTTGCGTTA
GACACGGTGGAGGGAAAAGGTGTAAGTTTGGAAATTGCGGTAAGAGCGCGCAAGGGAGCACAGATTTTTGTAAGGCGCACGGAGGTGGTAAGCGATGCTC
GTGGGGTGGTGGAGGATGCGAGAAGTTTGCGCGAGGGAAGAGCGGTCTTTGTGCTGCTCACGCCACGAGCAGTGCAAAGAGTACCGGAGGTGGTGGTGGT
TTGATACGATCAGGGCTCTTCCATGGCCTCGTCGTATCCGGTAGCAGCAGCGTTGAGAACCATAGCGCGATCTCGAACAGTTGTATCGAGTCGTTTGAGA
AGCATCAGCCACTTGCAAAACGACAGCATATGATGATACCACCACAGGTATTGGTACCAGTTTCGATGAAGTCGTCGCTGTCTTATTCGAGTTATAACTC
GAGTAGGAACGACAGTGGCGGTGATGGTTCGAGGAAGAGTTTGGATGAGATGGTGGTACTCCCTGAAGGGAGAGTCCATGGAGGGGGACTGATGTCATTG
TTTGGTGGGAATCTGAAGAATGTGGGAATCTGA
AA sequence
>Lus10019307 pacid=23141425 polypeptide=Lus10019307 locus=Lus10019307.g ID=Lus10019307.BGIv1.0 annot-version=v1.0
MALNSNEHVKNDTTLRLNFLGYQGNGTSASFSGGNRSNLDIDLGNGTDDGCKLVLGLGPYNNVGAVSSSSSKPKGSLASGVSCRQGLFSEGDSILKLGLS
GVANDNSLSGGLDSSVVTRTNPKIPIVDEGSTTAKKSGGYMPSLLLAPRMDFPKFPPQAESNDFGTKITHSSELEPSYEPSATTDFSMSSASEQATTTAT
SGSQRSNNPKKCKFAGCSKGGRGASGLCIGHGGGQRCQKHGCNKGAESRTAYCKAHGGGRRCDYLGCTKSAEGKTDFCIAHGGGRRCGYDGGCTKAARGK
SGLCIRHGGGKRCKVNDCTRSAEGHAGLCISHGGGRRCQHKECSKGAQGSTKFCKAHGGGKRCVFAECTKGAEGSTPLCKAHGGGKRCLFDGGGICPKSV
HGGTNFCVAHGGGKRCVVPGCTKSARGRTDSCVRHGGGKRCKFGNCGKSAQGSTDFCKAHGGGKRCSWGGGGCEKFARGKSGLCAAHATSSAKSTGGGGG
LIRSGLFHGLVVSGSSSVENHSAISNSCIESFEKHQPLAKRQHMMIPPQVLVPVSMKSSLSYSSYNSSRNDSGGDGSRKSLDEMVVLPEGRVHGGGLMSL
FGGNLKNVGI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64550 loricrin-related (.1) Lus10019307
[exp]
0 1
AT1G29530 unknown protein Lus10025373
[exp]
2.4 0.8375
AT2G03550 alpha/beta-Hydrolases superfam... Lus10019882
[exp]
8.1 0.7766
AT3G11280 MYB Duplicated homeodomain-like su... Lus10028264
[exp]
9.2 0.8052
AT4G13530 unknown protein Lus10041074
[exp]
10.2 0.8201
AT5G03670 unknown protein Lus10023875
[exp]
11.8 0.7740
AT4G40060 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) Lus10012753
[exp]
12.2 0.7536
AT3G62790 NADH-ubiquinone oxidoreductase... Lus10021691
[exp]
13.4 0.7677
AT5G50380 ATEXO70F1 exocyst subunit exo70 family p... Lus10022459
[exp]
13.5 0.8157
AT1G03350 BSD domain-containing protein ... Lus10042670
[exp]
13.7 0.8120
AT4G17080 Histone H3 K4-specific methylt... Lus10028158
[exp]
14.1 0.7926

Lus10019307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.