Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23140 848 / 0 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 556 / 0 ARM repeat superfamily protein (.1) AT4G37040 524 / 8e-178 MAP1D methionine aminopeptidase 1D (.1) AT1G13270 375 / 2e-120 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT3G25740 347 / 3e-110 MAP1C, MAP1B methionine aminopeptidase 1C (.1) AT3G54790 335 / 8e-101 ARM repeat superfamily protein (.1.2) AT2G45240 271 / 2e-81 MAP1A methionine aminopeptidase 1A (.1) AT3G01400 265 / 1e-79 ARM repeat superfamily protein (.1) AT4G16490 250 / 7e-73 ARM repeat superfamily protein (.1) AT3G46510 250 / 7e-71 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011514 [exp] 2134 / 0 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10021701 [exp] 389 / 1e-125 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2) Lus10011516 [exp] 394 / 3e-123 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10035045 [exp] 345 / 3e-109 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10021657 [exp] 281 / 6e-85 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10032023 [exp] 273 / 1e-82 AT2G23140 309 / 1e-98 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 273 / 1e-82 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 260 / 1e-76 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10001650 [exp] 248 / 3e-73 AT2G45240 637 / 0.0 methionine aminopeptidase 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051000 [exp] 1028 / 0 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 983 / 0 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 572 / 0 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G137400 [exp] 548 / 0 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1) Potri.008G117200 [exp] 379 / 1e-121 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2) Potri.005G225400 [exp] 390 / 2e-120 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.014G067300 [exp] 281 / 5e-85 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1) Potri.002G118800 [exp] 261 / 2e-78 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 255 / 3e-76 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 265 / 5e-76 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP) CL0020 [flax] [poplar] PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24 CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10019308 pacid=23141301 polypeptide=Lus10019308 locus=Lus10019308.g ID=Lus10019308.BGIv1.0 annot-version=v1.0 ATGGAGATATCTCTACTAAAAGTGCTTCTCAACAACATCTCCTCTTTTTCTCATCTATCGTCGTTTGAGAATGTAAACTCTGGTCTGGCCCAGAAGTATT TTCATAAGGCAGAAGAAATATTTAAGTTGCTTAGGCCAATACTTGATTCCTTCGTTGATTGTGACATAGCTTCCAATGAGGTGCTTAATAAAGACTTTGC AGAGTTAAGCCAATCTATCGATGAGCTCAGGGAGCTCTTCGAGACCTGCCAACCATTGTCGAGCAAAGTCTATTTGGCTCTTCAAACTGAATCATTATTA TCGAAGATTCGCAATTCTAGTCTGGATATTTTTGAATTTTTGAAGTCTACTGATGAGCATTTGCTTGAAGAATTGAGTTCATCATCTATTGAGTACTGCA TACAGAAAATTAAGCAACTGGGACTGGAACAAATGTCCTCTACAGTTAAGGAAGCCTTAAATGATCAAGATTGCTCTGATATCCTGGTCAAAATCGCCGA GAGTTTGAGCTTGAGAACCAACCAGGAGATTCTGATTGAAGCAGTGGCACTTGAAAAACTGAAGGAGGCTGCTGAACAAGCGGAAAAAAACGGGGAGGTC GAGTTCTTCGATCAACTGATTGCTCTGGTAACCAGGATGCACGATCGCCTTGTTCTAATCAAACAGTCCCAATCCAGTAGCCCTGTCCCTATACCTCCCG ATTTCTGCTGTCCTCTATCGCTCGAGTTGATGACAGATCCTGTAATTGTGGCATCGGGGCAAACCTACGAACGGGCGTTCATAAAAAGCTGGATCGAACT CGGCCTCACAGTGTGTCCAAAGACAAGACATACGTTGGGACACACTAATTTGATACCGAACTACACTGTCAAGGCCCTGATAGCAAATTGGTGCGATATA AACAAAGTCAAGCTACCGGATCCTGTCAAGTCTGTGCAGCCTTCTCCGATTCTTGTCCATCTCGGCTCTGGCTCGCCTAAAGAACCAACAAAGTCCGTAA GCTCATCTGGGTTCTCCCCTGCTGGTTTTCTGAGGGAAGGAAGAAGATCCCCGATACATCCTCGCTCCACTTCCGACAGTGCGTTACCCGGTATAGTTGG AAATGGGCAGGGAATCCATGATATTGATCCTGAAGAAAGGTTTGGTAACTCAGAGGAAAGCATCATAGATTCTATTGTTCAACCCTCTGCATCACCATCT AGAATGGAAGTTTCAGATTCTGCTGACGAATCGCTTCCTAGGAGCAATGGCCCGATTACGAATGGAACATTTTCTCGAGGATCATCAGGAGATGCTAATG ACTCTCTGGAGGTGTCGAATCATCTTACTTCATACAATAGTGACACATCCGGTGAAGTGAAACCCGAGCCACCGATTTCTGCTGTCTCGAACAGTTCTCG ATTGGAACCGGTATTCTCGCCTCGATTCGTTGAGGGTGCGAGGTCTCGAGGCCAGTCACTTTGGCGCCGTCCAACAGATAGACTTCCTCGGATCGTCCCT TCTCCTTCTACCGAAACAAGGGCGGATCTTTCTGGCCTCGAATCCCAAGTCAAGAAGCTGGTTGAGGATTTGAAGAGCGATTCAATCGACACGCAAAGAG AAGCAACCGAGCAACTCCGATTACTCGCGAAACACAACATGGATAACCGGATTGTAATCGCCAATAGCGAGGCGATTACTTTGCTAGTGAACTTGCTCCG ATCAACCGACATGAAGATTCAGGAGAATGCAGTTACAGCACTTCTAAACTTATCCATCAACGACAACAACAAAACCGCCATTGCCGATGCAGAAGCCATC GAGCCGTTAATCTACGTCCTCGAAACGGGGAGTCCGGAAGCCAAAGAGAACTCGGCCGCTACGTTGTTTAGCCTCTCGGTTATCGAGGAAAACAAAGTTC GGATCGGAAGATCTGGTGCGGTTGGACCGCTGGTTGATCTATTGGGGAACGGAACTCCGAGAGGGAAAAAAGATGCGGCCACGGCTTTGTTCAACCTATC GATCTTCCACGAGAACAAGGCGAGGATCGTTGCTGCCGGTGCGGTTAAGCACCTTGTGGAGCTGATGGACCCGGCTGCCGGAATGGTGGATAAAGCGGTG GCGGTTCTGGCAAACCTCGCGACGATCCCCGAGGGGAGGAATGCGATCGGCCAGCAAGGCGGGATCCCAGTCTTGGTCGAAGTCGTCGAGTTAGGGTCAG CCAGAGGGAAAGAGAACGCGGCGGCTGCTCTGTTGCAGCTTTGCCCGAACAGTACGAGGTTCTGCAACACGGTGCTCCAAGAAGGTGCTGTGCCACCGTT GGTGGCTTTGTCGCAGTCCGGCACTCCGAGGGCTAAAGAGAAGGCGCAGTTGCTTCTTAGCTACTTCAGAAATCAACGGCATGCTGGAGGACGGATTCAT GTTTCCATGAGATTTTCCAGGGCGCTTTCAGGGTTAACCAACTTTATTTTCAATAGAAGAATCGTACCAGGAGCACCCAACGTCAAGCGCAAAATTCTTC AGCCAGGGAAACTTTCTCCTCGCCGACCTGTTCCTGATCATATTCTCAAGCCTCCCTATGTCAACACTAGGCAGTCGCCTGGAATCTCTAGTGGCCCTGA AGTGCACGATCAGAAGGGGATAGAATGCATGAGAGCTTCCGGAAGACTTGCAGCTCAGGTTCTTCAGTATGCCGGGACTCTAGTAAAGCCAGGTGTAAAG ACTGACGAAATTGATGAAGCAGTACACCAAATGATTATTGAAAATGGTGCATATCCCTCGCCTCTAGGATATGGCGGTTTTCCAAAAAGTGTATGCACTT CAGTGAATGAGTGCATTTGCCATGGGATACCTGACTCCCGTGAGCTCGAGGATGGTGACATTATCAATATTGATGTTACAGTTTATTTAGATGGTTATCA TGGTGATACTTCGGCAACTTACTTCTGTGGCGATGTTGATGATAAGGCCAGAAACCTTGTTCAGGTGACCAAAGAATGTCTCGATAAAGCAATAGCAATT TGTGCACCAGGAGTGGAGTTGAAGAAAATTGGCAAGGCTATACATGATCATGCAGATAAACATCGTTACGGCGTTGTTAGAACCTTTGTTGGACATGGTG TTGGACGAGTTTTCCATGCCGATCCTGTTGTTCTGCACTACAATCCTGATATTAACAAGATGACAGGGAACAGAGAGGGTGGACGCATGCAACTGAATCA AACCTTCACCATTGAGCCAATGCTTACAATGGGCAGCATTAATCCTGTGATGTGGGATGACGAATGGACGGTGGTGACCGAAGATGGAAGCTTGTCAGCA CAGTTTGAGCATACGATTCTGATAACTGAAGGTGGAGCTCAGATATTGACCCAATGTGAATGA
AA sequence Show only first row Show all	>Lus10019308 pacid=23141301 polypeptide=Lus10019308 locus=Lus10019308.g ID=Lus10019308.BGIv1.0 annot-version=v1.0 MEISLLKVLLNNISSFSHLSSFENVNSGLAQKYFHKAEEIFKLLRPILDSFVDCDIASNEVLNKDFAELSQSIDELRELFETCQPLSSKVYLALQTESLL SKIRNSSLDIFEFLKSTDEHLLEELSSSSIEYCIQKIKQLGLEQMSSTVKEALNDQDCSDILVKIAESLSLRTNQEILIEAVALEKLKEAAEQAEKNGEV EFFDQLIALVTRMHDRLVLIKQSQSSSPVPIPPDFCCPLSLELMTDPVIVASGQTYERAFIKSWIELGLTVCPKTRHTLGHTNLIPNYTVKALIANWCDI NKVKLPDPVKSVQPSPILVHLGSGSPKEPTKSVSSSGFSPAGFLREGRRSPIHPRSTSDSALPGIVGNGQGIHDIDPEERFGNSEESIIDSIVQPSASPS RMEVSDSADESLPRSNGPITNGTFSRGSSGDANDSLEVSNHLTSYNSDTSGEVKPEPPISAVSNSSRLEPVFSPRFVEGARSRGQSLWRRPTDRLPRIVP SPSTETRADLSGLESQVKKLVEDLKSDSIDTQREATEQLRLLAKHNMDNRIVIANSEAITLLVNLLRSTDMKIQENAVTALLNLSINDNNKTAIADAEAI EPLIYVLETGSPEAKENSAATLFSLSVIEENKVRIGRSGAVGPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVAAGAVKHLVELMDPAAGMVDKAV AVLANLATIPEGRNAIGQQGGIPVLVEVVELGSARGKENAAAALLQLCPNSTRFCNTVLQEGAVPPLVALSQSGTPRAKEKAQLLLSYFRNQRHAGGRIH VSMRFSRALSGLTNFIFNRRIVPGAPNVKRKILQPGKLSPRRPVPDHILKPPYVNTRQSPGISSGPEVHDQKGIECMRASGRLAAQVLQYAGTLVKPGVK TDEIDEAVHQMIIENGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRELEDGDIINIDVTVYLDGYHGDTSATYFCGDVDDKARNLVQVTKECLDKAIAI CAPGVELKKIGKAIHDHADKHRYGVVRTFVGHGVGRVFHADPVVLHYNPDINKMTGNREGGRMQLNQTFTIEPMLTMGSINPVMWDDEWTVVTEDGSLSA QFEHTILITEGGAQILTQCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23140			RING/U-box superfamily protein...		Lus10019308 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10024064 [exp]	2.4	0.8644
AT3G06880			Transducin/WD40 repeat-like su...		Lus10036201 [exp]	7.1	0.8374
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026123 [exp]	12.1	0.8240
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011683 [exp]	13.9	0.8350
AT5G62840			Phosphoglycerate mutase family...		Lus10007865 [exp]	24.8	0.8531
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	26.4	0.8587
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	29.9	0.8412
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	35.1	0.8309
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	36.0	0.8238
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	40.2	0.8412

Compare expression of checked genes

Lus10019308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.