Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43100 676 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G50050 619 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 176 / 3e-48 Eukaryotic aspartyl protease family protein (.1) AT2G36670 162 / 4e-43 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 154 / 2e-40 Eukaryotic aspartyl protease family protein (.1) AT3G02740 138 / 7e-35 Eukaryotic aspartyl protease family protein (.1) AT1G05840 137 / 1e-34 Eukaryotic aspartyl protease family protein (.1) AT5G36260 132 / 7e-33 Eukaryotic aspartyl protease family protein (.1) AT2G03200 124 / 4e-30 Eukaryotic aspartyl protease family protein (.1) AT3G25700 122 / 1e-29 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011513 [exp] 1176 / 0 AT5G43100 687 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018709 [exp] 674 / 0 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024792 [exp] 669 / 0 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 159 / 4e-42 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 156 / 5e-41 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 159 / 3e-40 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10005356 [exp] 154 / 4e-40 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 147 / 1e-37 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021485 [exp] 144 / 1e-36 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144600 [exp] 732 / 0 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 681 / 0 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 175 / 1e-47 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 172 / 8e-47 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 148 / 3e-38 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G146400 [exp] 140 / 2e-35 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 139 / 3e-35 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 133 / 5e-33 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G232600 [exp] 124 / 4e-30 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 120 / 5e-29 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10019309 pacid=23141379 polypeptide=Lus10019309 locus=Lus10019309.g ID=Lus10019309.BGIv1.0 annot-version=v1.0 ATGGCGCGCCGGCCAAGTTTAGCTTCGCTTCTCCTCCCATTCCTCATCGTCTTCTTATGCTCTCCCGTCCCCTTGACCGCTCTCTTCGAATCCCCCGCCG GGTGTCACCAGCATCACCGCGTTTCATCCGCCAATGCCACCGCTATGATACTCCCGCTCATCCCTTCCCTTCCCAGGACGTTCGCTAACCCTAGCTACCG CAGACATCTACAGAGATCGTTACGTGGCGGTGCTAGCTCCCTTCCTCATGCTCGTATGGGACTGTACGACGATCTCCTCATCCACGGGTATTACACAACG CACGTATGGATTGGGACTCCGCCTCAGAAGTTCTCTTTGATTGTCGATACAGGCAGCACTGTCACTTATGTACCTTGCTCCACTTGCGAGCAATGCGGGC ACCATGAGGATCCAAAATTCGAACCGGAATCATCAAGCACTTACGAGCCTGTGAAGTGCACAATGGACTGCAATTGTGATATTGATAAGGGGGTCTGCAT TTACGAGAGGCAATATGCTGAATTGAGCTCCAGCAGTGGTGTCCTCGGTGGGGACCTGTTATCATTTGGTAACGAGAGTGGGCTCGAGCCTCACCGAGCT GTTTTCGGCTGTGAGAATTCGGAGACAGGCGATCTCTACAGCCAACATGCTGACGGAATTATGGGGTTGGGCCGAGGTGATTTGAGCGTTGTGGATCAGC TTGTTGGGAAGGGTGTGATCAACGATTCGTTCGCATTGTGTTACGGTGGAATGGACATTGGAGGAGGCGCCATGGTCCTCGGTTCGATATCTCCACCTTC TGGCATGGCGTTTGCTTATTCAGACCCTTCTCGCAGTCCATACTACAATATTGATTTGAAGGAAATACATGTTGCCGGCAAGAAATTGCAGCTGGACACT CAAGTTTTCAATGAAAAATATGGGACCGTCTTGGATAGTGGTACCACATACGCTTACCTACCGGAAACAGCATTTTCTGCCTTTAAGGATGCTATTATAA AGGAACTGCATTCCTTGAAGCAGATTCAAGGTCCTGATCCTAATTATAATGATATTTGTTTCTCTGGTGCTAGCAGTGATGCACTGGAAATGTCACGTTC CTTCCCAAAGGTCGAATTTGTGTTTGACAAAGAGCAAAAACTTATACTGTCTCCTGAAAACTACTTGTTTCGGCACTCAAGGGTGAAAGGTGCCTACTGT CTAGGGGTGTTCCCGAATGGAAACGATCCAACAACACTTCTTGGTGGAATAGTTACTCGAAATACTCTTGTTGTATACGACCGAGAGAACACGAAAGTGG GCTTTTGGAAGACTAATTGTTCCGAGCTATGGGAAAGACTTCAAGGAGCTAGTTCCTCTCCAGTGCCATCACCACATCCAACTTCCGATGAACACCACCA GACCAAAGAAGCTTCACTGAGTTTGGCTCCTAGTCTAAATGACCAACCACAATATGTTCTTCCAGATGGAATCTACATCGGACAAATCGAATTCGAGATG TCATTTAATGTCAAATACTCTGATCTGAAGAACAATCTTGACAAACTAGTGGAATCCATTGCTCTAGAGTTGAAAATCAACACTTCACAGGTCCACATGG AAAGCGTTGCTCCGGACGGAAATGCTTCGCTCGTCGCGTGGTCCATAGTTCCTTCACGATCTGCTAACCATATCTCCAATGGCACCGCTCTCAACATCAT TACTCGAGTTGTTAAGCACCAAATGCAGCTTCCTGCTTCGTTCGGAACATACAAGTTAGTCCACTGGAAAGTTCAGGAACCTAGAGAACAACAGAAATGG TGGGAGAAACACTACCTAGTCGTGGCTATAGCTGGTACCATAGCACTCGTAATTGTTTTATCCGGGATCGGATTGTGGCTTGTTTTGCAGCGTAAGCGAA GTGTGGCTTACGAACCGGTCACTACTGATGCTGCTGCTGAGCAGGAATTGCAGCCTCTATGA
AA sequence Show only first row Show all	>Lus10019309 pacid=23141379 polypeptide=Lus10019309 locus=Lus10019309.g ID=Lus10019309.BGIv1.0 annot-version=v1.0 MARRPSLASLLLPFLIVFLCSPVPLTALFESPAGCHQHHRVSSANATAMILPLIPSLPRTFANPSYRRHLQRSLRGGASSLPHARMGLYDDLLIHGYYTT HVWIGTPPQKFSLIVDTGSTVTYVPCSTCEQCGHHEDPKFEPESSSTYEPVKCTMDCNCDIDKGVCIYERQYAELSSSSGVLGGDLLSFGNESGLEPHRA VFGCENSETGDLYSQHADGIMGLGRGDLSVVDQLVGKGVINDSFALCYGGMDIGGGAMVLGSISPPSGMAFAYSDPSRSPYYNIDLKEIHVAGKKLQLDT QVFNEKYGTVLDSGTTYAYLPETAFSAFKDAIIKELHSLKQIQGPDPNYNDICFSGASSDALEMSRSFPKVEFVFDKEQKLILSPENYLFRHSRVKGAYC LGVFPNGNDPTTLLGGIVTRNTLVVYDRENTKVGFWKTNCSELWERLQGASSSPVPSPHPTSDEHHQTKEASLSLAPSLNDQPQYVLPDGIYIGQIEFEM SFNVKYSDLKNNLDKLVESIALELKINTSQVHMESVAPDGNASLVAWSIVPSRSANHISNGTALNIITRVVKHQMQLPASFGTYKLVHWKVQEPREQQKW WEKHYLVVAIAGTIALVIVLSGIGLWLVLQRKRSVAYEPVTTDAAAEQELQPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43100			Eukaryotic aspartyl protease f...		Lus10019309 [exp]	0	1
AT1G34360			translation initiation factor ...		Lus10032318 [exp]	4.2	0.8642
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	5.0	0.8969
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10024826 [exp]	8.1	0.8761
AT2G47210	MYB		myb-like transcription factor ...		Lus10015735 [exp]	12.3	0.8714
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	13.7	0.8826
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	14.0	0.8626
AT1G42440			unknown protein		Lus10030752 [exp]	16.9	0.8699
AT2G48060			unknown protein		Lus10027982 [exp]	21.5	0.8335
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10029994 [exp]	24.4	0.8498
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003576 [exp]	28.4	0.8304

Compare expression of checked genes

Lus10019309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.