Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37280 251 / 2e-83 MRG family protein (.1) AT1G02740 197 / 2e-62 MRG family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011511 [exp] 362 / 2e-127 AT4G37280 449 / 5e-160 MRG family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G049300 [exp] 298 / 3e-102 AT4G37280 417 / 2e-147 MRG family protein (.1) Potri.014G022400 [exp] 215 / 2e-69 AT1G02740 314 / 2e-106 MRG family protein (.1) Potri.002G122500 [exp] 139 / 1e-41 AT4G37280 147 / 1e-43 MRG family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05712 [flax] [poplar] MRG MRG
Representative CDS sequence Show only first row Show all	>Lus10019312 pacid=23141395 polypeptide=Lus10019312 locus=Lus10019312.g ID=Lus10019312.BGIv1.0 annot-version=v1.0 ATGTTGGTACTCAGAAAAGTTTATGCTTTTGCAGATACAAAGACTGACAAGGAAGATACAAGAGGCAATGCACCAAAAGGCAAAAGGCGCAAGACTGACT CAAACGCAGAGAAGGGCAATGCCTCCATTGATAAGCTAGCCAAGATCCAAATTCCATCCACTCTTAAGAAGCAACTTGTTGACGACTGGGACTTTGTCAC TCAACAGGAGAAGCTTGTCAAACTTCCTAGATCACCAACTGTAGACGACATTTTGACCAAGTACCTCGAGTACAGGTCTAAGAAAGAAGGCGTAATGACT GATTCTGTCGGAGAAGTGTTGAAAGGGGTACGGTGCTACTTTGACAAAGCATTGCCAGTTATGCTCCTTTACAAAAATGAGCGGCAACAGTTCCAGGATG CTGTCAAAGAAGATGTCTCTCCTTCAACCATATATGGCGCTGAACATCTGTTGCGCCTATTTGTTAAGCTACCCGAGTTATTGGCATATGTGAATATTGA AGAGGACACACAGACTCCACTTCAGCAAAAACTACTCGACTTTCTCAAATTTCTTCAGAAGAACCAGAGTACCTTCTTCCTATCTGCATACGACGGATCA AAAGCTTCCGAAAGCAAAGACAAAGGCGAAAATGAGTGA
AA sequence Show only first row Show all	>Lus10019312 pacid=23141395 polypeptide=Lus10019312 locus=Lus10019312.g ID=Lus10019312.BGIv1.0 annot-version=v1.0 MLVLRKVYAFADTKTDKEDTRGNAPKGKRRKTDSNAEKGNASIDKLAKIQIPSTLKKQLVDDWDFVTQQEKLVKLPRSPTVDDILTKYLEYRSKKEGVMT DSVGEVLKGVRCYFDKALPVMLLYKNERQQFQDAVKEDVSPSTIYGAEHLLRLFVKLPELLAYVNIEEDTQTPLQQKLLDFLKFLQKNQSTFFLSAYDGS KASESKDKGENE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37280			MRG family protein (.1)		Lus10019312 [exp]	0	1
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10027993 [exp]	2.0	0.8287
AT5G64680			unknown protein		Lus10018951 [exp]	6.7	0.8372
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	9.2	0.8134
AT5G18540			unknown protein		Lus10033960 [exp]	14.3	0.7828
					Lus10041183 [exp]	14.7	0.7707
AT1G67420			Zn-dependent exopeptidases sup...		Lus10037015 [exp]	19.9	0.8116
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10020362 [exp]	31.2	0.7650
AT3G49645			unknown protein		Lus10002833 [exp]	41.0	0.7471
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10009488 [exp]	47.6	0.7464
					Lus10029181 [exp]	49.5	0.7309

Compare expression of checked genes

Lus10019312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.