Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37270 1033 / 0 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT5G21930 182 / 3e-47 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 180 / 1e-46 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT4G30110 177 / 7e-46 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 173 / 4e-44 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT1G63440 145 / 1e-35 HMA5 heavy metal atpase 5 (.1) AT5G44790 137 / 5e-33 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G30120 125 / 9e-30 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT2G24520 49 / 2e-05 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT4G30190 46 / 0.0002 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011510 [exp] 1182 / 0 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Lus10023777 [exp] 185 / 3e-48 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10006955 [exp] 182 / 4e-47 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 181 / 6e-47 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10038364 [exp] 145 / 2e-35 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10008309 [exp] 140 / 9e-34 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 138 / 3e-33 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 127 / 1e-29 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038070 [exp] 123 / 2e-28 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G049000 [exp] 1135 / 0 AT4G37270 1104 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Potri.006G076900 [exp] 201 / 5e-53 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Potri.001G205400 [exp] 184 / 4e-48 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G024000 [exp] 175 / 6e-45 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 166 / 4e-42 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.001G019100 [exp] 162 / 8e-41 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 154 / 4e-38 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 151 / 2e-37 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G125600 [exp] 151 / 2e-37 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 149 / 8e-37 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10019313 pacid=23141329 polypeptide=Lus10019313 locus=Lus10019313.g ID=Lus10019313.BGIv1.0 annot-version=v1.0 ATGGAAGCTTCCACCGCTGTCCGTCACACAATCGGCGTGATCGAGTTCCCTGCACTCCGTCCTTCCTCCTCGTCCAGACAACTCTGCCGTCTGAACCCTC TTCCTTCTCTTCCTCTTCGAAACAGACTCGTTTCCCCCAGTTTCAACCGCCTTTGCATTGCTGAAGCTTCCAATCACAGTCACAGTCATAGTCACAATCA CAACCACCACCACCATCGGAACGAAGATCACGACCACAGCCATAGTCAACATCAACATAATCATCATCATCACCATCACCACCACGGAGACGAGCTACAG GAGCTGACAGGCGCGCAGAGAGCTGTCGTTAGGTTTGCGGACGCAGTGAGGTGGACGGATCTCGCGAATGTGTTGAGGGAGCACTTGCAGCTCTGTTGCT GCTCCGCGGCTTTGTTTCTCGCTGCTGCTATTGTTCCACACTTGGCTCCTAAGCAAGTCGTTAAACCTCTCCAGAATGCCTTGATGATCGTCGGTTTCCC TCTGGTCGGGGTCTCGGCATCCTTGGATGCTCTAATTGAAATTGCTGGCGGGAAGGTGAACATCCATGTGTTAATGGCTATGGCAGCGTTTGCCTCTGTC TTTATGGGGAACGCGTTGGAAGGAGGGTTACTTCTCGCAATGTTCAATCTCGCTCACATTGCTGAAGAGTTCTTCACTAGTCGATCGTTGGTGGATGTTA AAGAGTTGAAAGAGAATCATCCAGATTCTGCCCTTGTGGTGGATGTTGAAGAAGGGGAAACACCTGATCTCTTGCATCTGTCCTATTCCAGTGTGCCAGT GCATGACATAGAAGTGGGCTCGTATGTTCTGGTTGGAGCTGGTGAGGCCGTGCCAGTAGATTGTCAAATTTTCCAAGGTACTGCAACAATTACTATCGAA CATTTGACTGGGGAAGCAAAACCAATTGAAGCGAAAGTTGGAGATGGAATTCCGGGTGGTGCGAGGAACTTGGATGGAAGAATGATTGTAAAGGCAACAA AGACATGGAAAGAGTCAACATTAAGTAGAATTGTGCAATTGACAGAAGAGGCACAGCAAAACAGACCAAAACTTCAGAGATGGCTCGACGAGTTTGGTGA GCAGTACAGCAAAGTCGTAGTAGGCTTGTCATTTTCTGTCGCTTTCCTTGGACCATTGCTTTTCAAGTGGCCGTTCATGAGTACATCAGTCTGCAGAGGA TCAATCTACAGAGCACTAGGATTAATGATGGCTGCATCACCATGTGCCTTGGCTGTGGCTCCGTTGGTATATGCCACTGCCATTAGCTCCTGTGCTAAAA AGGGAATATTGCTTAAAGGAGGACAGGTTCTGGATGCTTTGGCATCTTGCCACACAATTGCATTTGACAAAACTGGGACACTGACAACAGGAGGGCTTAT GTTCAAAGCAATTGAGCCAATTTACGGACATCAGGTTGGAAAAAATAGGACGACCCCTGCTTCTTGCTGCATACCCAGTTGTGAAAAGGAAGCTCTTGCT GTAGCTGCTGCTATGGAGAAGGGCACTACACATCCTATTGGGAGGGCTGTTGTAGATCATAGCATCGGGAAAGATCTACCTTCAATCTCTGTTGAAAAAT TCGAATACTATCCTGGTAGAGGCCTCATTGCGACACTGAACGACTTCCAGTCAGGAAGTGGAAGAGCTAGATCATTGAAAGCATCCCTTGGTTCTGTTGA ATTCATCACTTCTCACTGTAAATCCGAAGACAAGTCACGAAAAATTAAGGAAGCTGTCAGAGCTTCTTCTTACGGAAACGACTCGGTCCATGCTGCTCTT TCCGTCGATGAAAAGATAACACTCATCCATCTCGAGGACAGACCGCGAGAAGGGGTTGCAGACGTCATATCAGAACTGCAGGACAAAGCAAAGCTCGACG TAATGATGTTAACAGGCGACCACAAATCGAGCGCATGGAGAGTTGCCAAAACCGTGGGCATTACTCAAGTTCACTGTAGTTTGAAACCGGAGGACAAGCT CAATCATGTAAAGACTATCTCCAGGGACATGGGTGGCGGTCTGATTATGGTGGGTGAAGGTATCAACGATGCCCCAGCTCTCGCCGCAGCGACTGTAGGA ATCGTGCTCGCTCAGCGTGCCAGTGCAACAGCAGTAGCTGTTGCAGATGTATTGCTGTTGCGTGACAATATATCAGTCGTTCCCTTCTGCATTGCCAAAT CCCGCCAAACAAGCTCCTTGGTCAAGCAAAATGTAGCGCTGGCCTTGACTTCCATAATCCTTGCTTCCCTTCCCTCCGTTCTGGGATTCCTCCCACTGTG GTTGACGGTTCTGTTACACGAAGGTGGAACCCTCCTGGTGTGTCTAAACTCGGTACGAGCACTAAACGAACCGAAATGGTCATGGAAGGAAGACATAAAG CATCAACTGAAATCCCGATTAGTCAACAACAGCAACACAAACTCCTCCTCCGCCGATTCTAACATGTTTCATACATCTACCAAGTACCAACTAGGGATGC CAATGGCCATGACGATCGTTATCACGGGTATTTTGCCCGGATGCGAAGTGGTCTGA
AA sequence Show only first row Show all	>Lus10019313 pacid=23141329 polypeptide=Lus10019313 locus=Lus10019313.g ID=Lus10019313.BGIv1.0 annot-version=v1.0 MEASTAVRHTIGVIEFPALRPSSSSRQLCRLNPLPSLPLRNRLVSPSFNRLCIAEASNHSHSHSHNHNHHHHRNEDHDHSHSQHQHNHHHHHHHHGDELQ ELTGAQRAVVRFADAVRWTDLANVLREHLQLCCCSAALFLAAAIVPHLAPKQVVKPLQNALMIVGFPLVGVSASLDALIEIAGGKVNIHVLMAMAAFASV FMGNALEGGLLLAMFNLAHIAEEFFTSRSLVDVKELKENHPDSALVVDVEEGETPDLLHLSYSSVPVHDIEVGSYVLVGAGEAVPVDCQIFQGTATITIE HLTGEAKPIEAKVGDGIPGGARNLDGRMIVKATKTWKESTLSRIVQLTEEAQQNRPKLQRWLDEFGEQYSKVVVGLSFSVAFLGPLLFKWPFMSTSVCRG SIYRALGLMMAASPCALAVAPLVYATAISSCAKKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHQVGKNRTTPASCCIPSCEKEALA VAAAMEKGTTHPIGRAVVDHSIGKDLPSISVEKFEYYPGRGLIATLNDFQSGSGRARSLKASLGSVEFITSHCKSEDKSRKIKEAVRASSYGNDSVHAAL SVDEKITLIHLEDRPREGVADVISELQDKAKLDVMMLTGDHKSSAWRVAKTVGITQVHCSLKPEDKLNHVKTISRDMGGGLIMVGEGINDAPALAAATVG IVLAQRASATAVAVADVLLLRDNISVVPFCIAKSRQTSSLVKQNVALALTSIILASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPKWSWKEDIK HQLKSRLVNNSNTNSSSADSNMFHTSTKYQLGMPMAMTIVITGILPGCEVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	0	1
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	3.7	0.8504
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	4.8	0.8713
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10028796 [exp]	5.1	0.8661
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	6.0	0.8546
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	7.1	0.8651
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	8.5	0.8121
AT3G58050			unknown protein		Lus10029299 [exp]	9.4	0.8444
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014618 [exp]	12.8	0.8347
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	13.4	0.8437
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	13.9	0.8331

Compare expression of checked genes

Lus10019313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.