Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50060 44 / 5e-05 MYB ATMYB77 myb domain protein 77 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030336 [exp] 69 / 3e-13 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10010260 [exp] 65 / 5e-12 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048900 [exp] 66 / 3e-12 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 55 / 1e-08 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G122600 [exp] 47 / 4e-06 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 40 / 0.0007 AT4G37260 226 / 3e-72 myb domain protein 73 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019314 pacid=23141414 polypeptide=Lus10019314 locus=Lus10019314.g ID=Lus10019314.BGIv1.0 annot-version=v1.0 ATGGTGTGCAACATTGTCCGAATCAATGTCTGCACGCATCGAGGTTCGAGCCAAAGTCTGGATAAAGGTCCACAACAAGGTGTTCCGGCCGGTTCCGAGA ACAGGAGCTGTGGAGGTTGTTCCTCCAACTCCACCCTCAAACGCAAGTGTGATGGAGAAGGCGGTGGGAAAGAAGGGTACGATGGTCATTTCGATGATTC CTGCAGGCCGCCACTGAAGAGGTCGACGAGCGCCGGATCCGGCGTACCCGTTTCCATTGTGAAACCGGATAGTCCGTCTGGATCTGACTTCAGCGATTAC TCCAGTAGACCGCCTTTGCCTTTAGCTTTGCCTCTGCCTCCGACCACTATAACGACGCAGGTGTTCCGGCCGGTTCCGAGAACAGGAGCTGTGGAGGTTG TTCCTCCAGCTGAAACGACATCGTCTAGCGGCGGAGGAATCAACGATCCGATTGACGACCCACCGACGTCGTTGTGTCTCTCACTGCCGGGAGCAAGCGC CGATTCCTCTTGCGACGTATCCACGTCGCGAGTCCCGGATGCGGCGACGATGAATAGCGGTGCGGGGTTGAACAGGATTGAGGAGAGAGATGAGTCAGCA ACGGCGGTAGTTGTTTATTTTAAAAAAAATTGTTTTGTCGTTTCTGGGGGGGGAATAATTCTGGAGGTGTCAATGTACAGAGAAATGGCAGAGAGAAGTG ATAGAGTAAGACAGTAA
AA sequence Show only first row Show all	>Lus10019314 pacid=23141414 polypeptide=Lus10019314 locus=Lus10019314.g ID=Lus10019314.BGIv1.0 annot-version=v1.0 MVCNIVRINVCTHRGSSQSLDKGPQQGVPAGSENRSCGGCSSNSTLKRKCDGEGGGKEGYDGHFDDSCRPPLKRSTSAGSGVPVSIVKPDSPSGSDFSDY SSRPPLPLALPLPPTTITTQVFRPVPRTGAVEVVPPAETTSSSGGGINDPIDDPPTSLCLSLPGASADSSCDVSTSRVPDAATMNSGAGLNRIEERDESA TAVVVYFKKNCFVVSGGGIILEVSMYREMAERSDRVRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10019314 [exp]	0	1
AT5G42850			Thioredoxin superfamily protei...		Lus10037477 [exp]	5.5	0.7639
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	9.9	0.7546
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10007105 [exp]	11.2	0.7240
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	16.3	0.7337
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	16.9	0.7285
AT4G29070			Phospholipase A2 family protei...		Lus10030011 [exp]	20.1	0.7129
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	21.0	0.7220
AT1G50660			unknown protein		Lus10002069 [exp]	21.4	0.7246
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	23.0	0.6591
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	23.4	0.7224

Compare expression of checked genes

Lus10019314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.