Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23300 611 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 606 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 455 / 3e-150 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 421 / 8e-137 RLK receptor-like kinase (.1) AT2G01210 348 / 2e-109 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 274 / 1e-81 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 265 / 3e-78 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 255 / 3e-74 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 229 / 3e-65 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 204 / 8e-57 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011509 [exp] 1095 / 0 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 749 / 0 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 748 / 0 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014098 [exp] 302 / 4e-91 AT4G37250 710 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019816 [exp] 267 / 7e-84 AT5G67280 275 / 8e-87 receptor-like kinase (.1) Lus10034108 [exp] 275 / 3e-82 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 275 / 4e-82 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 201 / 4e-55 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 201 / 5e-55 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048800 [exp] 707 / 0 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 703 / 0 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 537 / 0 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 365 / 7e-116 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 359 / 8e-114 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 218 / 3e-61 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 218 / 2e-60 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 210 / 2e-58 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 209 / 2e-58 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G119000 [exp] 206 / 7e-57 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019315 pacid=23141345 polypeptide=Lus10019315 locus=Lus10019315.g ID=Lus10019315.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTCATTCTTCTTCTTCTTCTGCAATTACTTCACTTCTCTTCCGCCATTACCACAGACGGCATCCTCTTGCTCTCCTTCAAATTCTCAATCC TCAACGACCCCTTAAACTCCCTCGGGAACTGGAACTCCGACGACACAACTCCCTGCTTCTGGAACGGTGTCGTTTGCTCCCAAAACGATGTTGTTTCACT CTCCATCCCGAACTCCAACCTCGCCGGCTCAATCCCCGCCGATCTCGGCTCCATTCAGAACCTCCAGACGCTGAACCTTTCCAACAATTCGCTCAATGGG TCTCTCCCTTTCTCTGTTTTCAACAATACCCATCTCCGGTTTCTCGACGTTTCCAATAACCATCTCTCCGGCAGTATTCCGGCTGCCGCCGGAAGGCGGC AGAATCTGACGGTGATTTCTCTCCGGGGAAATCGCTTCGAGGGCGAGATCCCTAGTGGTGGGTTTGACTCGGTTAGAGCTCTGGACTTGTCTTTTAATCT GTTGAACGGATCTCTGCCTCCTGATTTTGGTGGTCGGAGTCTGGTTTACTTGAACGTGTCTAATAACCGGATCTCCGGCGTCATTCCAGCTGGTTTCGCG GCGGAGATTCCTCGTAATGCGGTGGTGGATCTGTCTTTCAACAATCTCACCGGTGAAGTTCCTGATTCGATGGTTTTTAAGAAACTCGACCGTCGGAAAA AATCCGCTGGGTTTTTATTTGCCGGGAACTCTGGTCTCTGTCGGAAGCCGTGTCCGAATTCCTCTTCTCCTCCTGCAATTGCTGTTCTTCCGACGACTAT CGCCTCCAGCCCTGCCGGCTCTGCTTCCGACGACGAGAAAAGATCAGGACAGAGCAGGTTCAGGACAGGAACGATTGCCGCAATCGTGGTTGGCGACGTC GCCGGAGTGTCGTTTCTATTCGCGGTCTTCTTCTACGTCTATTACTTCGTCCGGAAGGGAAACAATAAGGAATCAGCCATTCAAAACGCCAAGGAATCCG ATGACGCCACCTCATCGGATTCCTCGTCCGATTCCGAATCCAGAAGGTTCTCGAGATGGTCGTGCCTACGGAAGAAGAGCGAAATCGCCGCCAACGACGA AGATTCCGACGAGGTGGATTCTCAATTTGCCGCCTCCTCCGGCAGCAGCGGAGGGAGGAAGCTGGTGACAGTTGACGGGGAGAAGGAGCTTGAGTTGGAG ACGTTGCTGAGAGCTACGGCGTACATTTTGGGAGCTACGGGTTCGAGCATAGTGTACAAGGCGGTGCTGGAAGACGGTACTTCGTTCGCCGTCCGTCGAA TCGGGGAGAACCAGGTGGAGAGGTTTAGGGATTTCGAAAACCAGGTTCGGGTTATTTCCAAACTGGTCCACCCGAATCTGGTCCGGATTCGCGGGTTTTA TTGGGGACCCGAGGAGAAGCTTGTCATTTACGATTTCGTCCCCAATGGCAGCCTCGCCAACGCTCGTTATAGAAAAGCAGGAGGATCGTCGCCGTGCCAT TTGGCATGGGAGTCAAGGCTCAAGATAGCGAAAGGGGTAGCCCGTGGGCTTTCCTTCCTACACGAGAAGAAGCACGTCCACGGCAACCTAAAGCCCAAAA ACATCCTCTTGGGCCAAGACATGGAGCCGAAGCTCGGAGATTTCGGGCTCGAGAAGCTCATCTCCGGCGGCGACACTAGCTACAACGGAGGGGTATCGGC CCGGATATTCGGGAGCAAGAGGTCCACGGCCTCGCGGGATAGCTTCCCGGACCTGTCGTCGATCGGGCCGAGCCCCAGCCCCAGCCCGAGCTCGATCGGA GGGCTTTCCCCGTACCACGCGCCGGAGTCTCTCCGGAGCATAAAGCCCAACCCGAAGTGGGACGTGTACTCGTTCGGGGTCGTACTGCTCGAGTTGTTGA CGGGGAAGGTCATAGTCGTTGACGAGACGGGCCAAGGGAGCAATGGGCTTGCCGTAGAGGACACGGGTCGAGCTTTGAGAGTGGCTGATGTGGCGATACG GGCTGACGTGGAGGGCCAAGAGGAGGCCTTGTTGGCATGCTTTAAGTTAGGTTATAGTTGTGCTTCTCCTTTGCCTCATAAGAGACCGACCATGAAAGAA GCTTCACAAGTTCTTGAGAAGATTCCTACGCCGGTTTCTTCAACTGTGTTCCTTTATGGTCAGTAG
AA sequence Show only first row Show all	>Lus10019315 pacid=23141345 polypeptide=Lus10019315 locus=Lus10019315.g ID=Lus10019315.BGIv1.0 annot-version=v1.0 MAFFILLLLLQLLHFSSAITTDGILLLSFKFSILNDPLNSLGNWNSDDTTPCFWNGVVCSQNDVVSLSIPNSNLAGSIPADLGSIQNLQTLNLSNNSLNG SLPFSVFNNTHLRFLDVSNNHLSGSIPAAAGRRQNLTVISLRGNRFEGEIPSGGFDSVRALDLSFNLLNGSLPPDFGGRSLVYLNVSNNRISGVIPAGFA AEIPRNAVVDLSFNNLTGEVPDSMVFKKLDRRKKSAGFLFAGNSGLCRKPCPNSSSPPAIAVLPTTIASSPAGSASDDEKRSGQSRFRTGTIAAIVVGDV AGVSFLFAVFFYVYYFVRKGNNKESAIQNAKESDDATSSDSSSDSESRRFSRWSCLRKKSEIAANDEDSDEVDSQFAASSGSSGGRKLVTVDGEKELELE TLLRATAYILGATGSSIVYKAVLEDGTSFAVRRIGENQVERFRDFENQVRVISKLVHPNLVRIRGFYWGPEEKLVIYDFVPNGSLANARYRKAGGSSPCH LAWESRLKIAKGVARGLSFLHEKKHVHGNLKPKNILLGQDMEPKLGDFGLEKLISGGDTSYNGGVSARIFGSKRSTASRDSFPDLSSIGPSPSPSPSSIG GLSPYHAPESLRSIKPNPKWDVYSFGVVLLELLTGKVIVVDETGQGSNGLAVEDTGRALRVADVAIRADVEGQEEALLACFKLGYSCASPLPHKRPTMKE ASQVLEKIPTPVSSTVFLYGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37250			Leucine-rich repeat protein ki...		Lus10019315 [exp]	0	1
AT5G53060			RNA-binding KH domain-containi...		Lus10022390 [exp]	10.1	0.7399
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	10.9	0.8565
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	12.5	0.8454
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	15.5	0.8083
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	19.1	0.7848
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10041214 [exp]	19.6	0.8168
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10025419 [exp]	20.4	0.7394
AT5G36930			Disease resistance protein (TI...		Lus10022707 [exp]	26.4	0.7210
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	38.2	0.7862
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	42.6	0.7940

Compare expression of checked genes

Lus10019315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.