Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67270 370 / 1e-128 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) AT3G47690 282 / 1e-94 ATEB1A, ATEB1H2 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1) AT5G62500 281 / 5e-94 ATEB1B end binding protein 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011508 [exp] 533 / 0 AT5G67270 400 / 1e-140 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Lus10023606 [exp] 286 / 3e-96 AT5G62500 397 / 6e-141 end binding protein 1B (.1) Lus10024235 [exp] 277 / 2e-92 AT5G62500 388 / 1e-136 end binding protein 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048700 [exp] 411 / 9e-145 AT5G67270 436 / 8e-155 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Potri.005G142200 [exp] 403 / 9e-142 AT5G67270 442 / 5e-157 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Potri.015G062900 [exp] 299 / 3e-101 AT5G62500 421 / 3e-150 end binding protein 1B (.1) Potri.012G069400 [exp] 295 / 1e-99 AT3G47690 422 / 6e-151 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03271 [flax] [poplar] EB1 EB1-like C-terminal motif CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10019316 pacid=23141315 polypeptide=Lus10019316 locus=Lus10019316.g ID=Lus10019316.BGIv1.0 annot-version=v1.0 ATGGCGACGAAGATCGGGATGATGGACCCGGCGTACTTCGTAGGCAGATCGGAGATTCTCGCCTGGATCAACTCCACTCTCAAACTCAATCTCTCCAAAG TTGAAGAGGCGTGCGGTGGAGCGGTTCACTGCCAGTTGATGGACGCGGTTCATCCAGGAATCGTGCCGATGCACAAGGTGAACTTCGATGCGAGGAGTGA GTACGAGAAGATCCAGAACTATAAAGTCCTTCAGGATGTGTTCAACAAGCTCAAAATCACCAAGCACATTGAAGTGACAAAGCTCGTGAAAGGAAGGCCG CTTGATAATCTGGAGTTCATGCAGTGGTTGAAGCACTACTGCGATTCCGTCAACGGAGGCCTTGCCGATTACAATCCAACTGAGAGAAGAGAAGCTAGCA AAGGAGGGAAAGAAGTGGCGAAGAGAGGAGCTCCGTCAGCCAAGGCCGCCAATGCAGTCGCATCCAAGGCTCAACACCACGGGGGTGCTCGGAGAAACGA CATGTCGTCGTCGATGAACTCTAATTCGTCAACCCAATCAGTCAAGGCGGCTTCTAGACCACCAACACCAGTACCAGCATACGAAGAAGAGATCACAGAA CTGAAGCTATCAGTGGACAGCCTCGAGAAAGAGAGAGACTTCTACTTTTCAAAGCTTAGAGACATTGAGCTACTGTGCCAATGCCCTGGCCTTGAAGGCA TGCCTGCTGTTGCTGCAATTCAGAAGATACTCTATGCAGCAGACAACGATGGCTCAGCTGCAGCAGAAGCTCAAGCCATGGTGGCCTCTCTCTGTCAGCT ACAGAAGGTAGAAGAAGAAGAGGTAGAAGAAGACGAGGACCAAAAGGTGGCATCATCAACCGATTCGCAGAAGCGAAAAGGAATCCGGAACTTGGATGTC GATGCTGCTGGCATCTCGACTCTGTCCCCTAGGCGACGATTCCCGGAATCAGTCGACGTCCATTCCCCTATTATGAACTACTGA
AA sequence Show only first row Show all	>Lus10019316 pacid=23141315 polypeptide=Lus10019316 locus=Lus10019316.g ID=Lus10019316.BGIv1.0 annot-version=v1.0 MATKIGMMDPAYFVGRSEILAWINSTLKLNLSKVEEACGGAVHCQLMDAVHPGIVPMHKVNFDARSEYEKIQNYKVLQDVFNKLKITKHIEVTKLVKGRP LDNLEFMQWLKHYCDSVNGGLADYNPTERREASKGGKEVAKRGAPSAKAANAVASKAQHHGGARRNDMSSSMNSNSSTQSVKAASRPPTPVPAYEEEITE LKLSVDSLEKERDFYFSKLRDIELLCQCPGLEGMPAVAAIQKILYAADNDGSAAAEAQAMVASLCQLQKVEEEEVEEDEDQKVASSTDSQKRKGIRNLDV DAAGISTLSPRRRFPESVDVHSPIMNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10019316 [exp]	0	1
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10039033 [exp]	1.0	0.9751
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	2.0	0.9701
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10003236 [exp]	2.8	0.9658
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	4.6	0.9687
AT1G65710			unknown protein		Lus10010952 [exp]	6.3	0.9657
AT3G54750			unknown protein		Lus10016201 [exp]	9.3	0.9396
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	9.5	0.9586
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	9.5	0.9629
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	9.8	0.9621
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	9.8	0.9634

Compare expression of checked genes

Lus10019316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.