Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67260 295 / 2e-98 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 281 / 1e-92 CYCD3;3 CYCLIN D3;3 (.1) AT4G34160 253 / 1e-81 CYCD3;1 CYCLIN D3;1 (.1) AT2G22490 148 / 2e-41 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT1G70210 140 / 1e-38 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 130 / 4e-35 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 112 / 2e-28 CYCD4;2 cyclin d4;2 (.1) AT4G37630 110 / 2e-27 CYCD5;1 cyclin d5;1 (.1.2) AT4G03270 90 / 3e-20 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 89 / 1e-19 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011507 [exp] 572 / 0 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019825 [exp] 249 / 4e-80 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 247 / 3e-79 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10018739 [exp] 218 / 6e-68 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10024796 [exp] 212 / 5e-66 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10027874 [exp] 186 / 9e-55 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10029194 [exp] 133 / 4e-36 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 130 / 1e-34 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10002824 [exp] 97 / 1e-22 AT4G34160 142 / 7e-40 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G141900 [exp] 363 / 7e-125 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.007G048300 [exp] 358 / 4e-123 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.001G301800 [exp] 263 / 2e-85 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.002G123000 [exp] 260 / 1e-84 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.009G097800 [exp] 255 / 1e-82 AT4G34160 331 / 3e-112 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 254 / 5e-82 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.002G103500 [exp] 155 / 3e-44 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 154 / 6e-44 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.009G086700 [exp] 136 / 8e-37 AT1G70210 168 / 3e-49 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 135 / 1e-36 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019317 pacid=23141327 polypeptide=Lus10019317 locus=Lus10019317.g ID=Lus10019317.BGIv1.0 annot-version=v1.0 ATGAAACCACATCACGAACATCAGCTACCATCGCCGCTCCTGGAAGGACTCTACTGTGAGGAAGATGGGTTCTTCTCGCCGGCGGTGGGGGAACAAGTAC CAGACGGCGGCGGTGGCGGAGGCGTTCAATACGGGGTCGTTTTGGAGCCGGGGGACTTGTTGTGGGAGGAAGGCGAGCTGGTTTCGTTGATTTCCAAACA GAGAGCTGGGAATGACGATGTGCAGTCAGGCTGTTCGAGGGTTTGCCGCAGAGAGGCAATTGATTGGATGTTGAGAGTGAAGGCGCATTATGGATTCGCT GCTTTGACCTGCGTTCTTGCAGTGAATTATTTCGATAGATTCGTTTCTGGTTTCAGTTTTCGAGAGGACAAGCCTTGGATGGGTCAGCTTGCTGCTGTGG CTTGCTTGTCTCTTGCTGCTAAAGTGGAGGAAACCCAAGTGCCTCTTCTCTTGGAACTGCAAGTGGAGGACTCAAAGTATGTGTTTGAACCAAAGACCCT AAAGAAAATGGAGCTTCTTGTCCTGTCTACTCTTCAATGGAGGATGAATCCAGTTACCCCAATTCAATTCTTTGACCACATTATCAGGAGGCTTGGAATG AGGGCCCATCTGCTTCCGGAGTTCCTGTGGAGGTGTGAAAGTTTACTTCTTTCTGTGATTGCTGATTCAAGATTCATGAGGTTCCTTCCCTCGATATTAG CTGCCGCCACAATGCTGCACGTTATAAAGGAAGTAGAGGAATGCAACGAAGAGGAATACCGAAACCAGCTTATTTCTGTGCTCAAAATCAGTGAGGATGA GATCATTGAGTGTTACGAGCTCATTGCCTCACAAGAGCGTAGTCACAAGCGCAAGCATCCATCAACCGAACCGGGCAGCCCTAGTGGCGTAATCGATGCT TCTTTCAGCAGTGATAGCTCGAATAGTTCGTGGGACGTGGCTTCTTCTTCTCCTTTGCATATGTACAAGAGGAGCAGAACTTGGGACCAGCAGATGCGAT TGCCGAAACAGAATCGTACGTTCGCTGATCCAATTAGCAGTCCGCGTTAG
AA sequence Show only first row Show all	>Lus10019317 pacid=23141327 polypeptide=Lus10019317 locus=Lus10019317.g ID=Lus10019317.BGIv1.0 annot-version=v1.0 MKPHHEHQLPSPLLEGLYCEEDGFFSPAVGEQVPDGGGGGGVQYGVVLEPGDLLWEEGELVSLISKQRAGNDDVQSGCSRVCRREAIDWMLRVKAHYGFA ALTCVLAVNYFDRFVSGFSFREDKPWMGQLAAVACLSLAAKVEETQVPLLLELQVEDSKYVFEPKTLKKMELLVLSTLQWRMNPVTPIQFFDHIIRRLGM RAHLLPEFLWRCESLLLSVIADSRFMRFLPSILAAATMLHVIKEVEECNEEEYRNQLISVLKISEDEIIECYELIASQERSHKRKHPSTEPGSPSGVIDA SFSSDSSNSSWDVASSSPLHMYKRSRTWDQQMRLPKQNRTFADPISSPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	0	1
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10004478 [exp]	1.7	0.8343
AT3G53540			unknown protein		Lus10025295 [exp]	2.2	0.8137
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	2.4	0.8254
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	3.0	0.8239
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10041328 [exp]	4.5	0.8200
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10015772 [exp]	6.9	0.8022
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	8.4	0.7893
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	8.5	0.7872
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	9.5	0.7738
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10005038 [exp]	10.2	0.7491

Compare expression of checked genes

Lus10019317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.