Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39550 49 / 7e-07 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017310 [exp] 216 / 6e-72 AT2G39550 86 / 4e-23 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10040303 [exp] 139 / 3e-39 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10000944 [exp] 43 / 2e-05 AT2G39550 76 / 2e-17 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10023422 [exp] 40 / 0.001 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054500 [exp] 56 / 5e-09 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019318 pacid=23141428 polypeptide=Lus10019318 locus=Lus10019318.g ID=Lus10019318.BGIv1.0 annot-version=v1.0 ATGGCGATTTCGCGTGGTTGCCGGTGGGAATTAGCAAGTTCATCACTGCCATTGTTGAGAAACGAATTGGCAGTGAGTGTTACTTGTCAAGCAATGCGGT GTTGGTCAACTGAAGGGGATGAAGTTGCTAGCTGGGTTTTATCACTCAGAGCTCAACTTAACCTCGGGATGTTGCTGCAATTGACAATGAGGGATGACCA AGACACTCCAGGCTCTGGCTGCCAGAACTCTACCTGTGATGTGATATACTGCATGTTTTTTCATCTTGGCAATTTAGCTACTTGGTGTACTTACATGCAA GATATACTTTTCATTCAGGCATATAATGGTGGCTTTGGGATGACTCCAGGTGCAGAATCCCATGATGACCTTTTGTCAAGCTGGCAGTGGAACTTCTTCC ATACTGGATGTTCAGCTGCTGCTAGATTGGTGCTTACAGGTTTTTCTTCTCATATAACCTTTCTTAGCATCTCAACTTCAATTACAAACACCAAACTATC AGCTGAGACAAAGAGTGTATCTAAATTAGCTTCTTTATTGCGCTACAGGCAAGCATTTGATGGTGGATTTCAAGATAAGCCGAGTGACACTTGCTATGCA TTCGGGTATCCGCCTCTTTTCCTGAGCTCCATTTGA
AA sequence Show only first row Show all	>Lus10019318 pacid=23141428 polypeptide=Lus10019318 locus=Lus10019318.g ID=Lus10019318.BGIv1.0 annot-version=v1.0 MAISRGCRWELASSSLPLLRNELAVSVTCQAMRCWSTEGDEVASWVLSLRAQLNLGMLLQLTMRDDQDTPGSGCQNSTCDVIYCMFFHLGNLATWCTYMQ DILFIQAYNGGFGMTPGAESHDDLLSSWQWNFFHTGCSAAARLVLTGFSSHITFLSISTSITNTKLSAETKSVSKLASLLRYRQAFDGGFQDKPSDTCYA FGYPPLFLSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10019318 [exp]	0	1
AT1G72090			Methylthiotransferase (.1)		Lus10008262 [exp]	12.4	0.7350
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011904 [exp]	13.6	0.6827
AT4G26220			S-adenosyl-L-methionine-depend...		Lus10009484 [exp]	13.7	0.7518
					Lus10016322 [exp]	16.0	0.7685
AT4G10540			Subtilase family protein (.1)		Lus10031097 [exp]	53.5	0.7214
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024197 [exp]	248.3	0.6726

Compare expression of checked genes

Lus10019318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.