Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67250 503 / 2e-175 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G50080 462 / 1e-159 VFB2 VIER F-box proteine 2 (.1) AT4G07400 434 / 3e-148 VFB3 VIER F-box proteine 3 (.1) AT1G47056 433 / 3e-148 VFB1 VIER F-box proteine 1 (.1) AT4G15475 80 / 1e-15 F-box/RNI-like superfamily protein (.1) AT2G25490 71 / 6e-13 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G27920 65 / 8e-11 F-box family protein (.1) AT5G23340 59 / 2e-09 RNI-like superfamily protein (.1) AT1G21410 56 / 3e-08 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 55 / 5e-08 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011506 [exp] 847 / 0 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10018737 [exp] 481 / 1e-166 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10024798 [exp] 98 / 1e-23 AT1G47056 179 / 4e-54 VIER F-box proteine 1 (.1) Lus10030102 [exp] 76 / 3e-14 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 75 / 8e-14 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 71 / 6e-13 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10002165 [exp] 70 / 2e-12 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10035161 [exp] 69 / 5e-12 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10034013 [exp] 64 / 2e-10 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048101 [exp] 513 / 2e-179 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.005G141800 [exp] 501 / 1e-174 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.014G023500 [exp] 489 / 6e-170 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.002G123100 [exp] 482 / 4e-167 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.006G081600 [exp] 243 / 1e-73 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.006G254100 [exp] 68 / 6e-12 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 67 / 1e-11 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.018G027700 [exp] 66 / 5e-11 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.002G074700 [exp] 64 / 8e-11 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.019G123400 [exp] 64 / 2e-10 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019319 pacid=23141298 polypeptide=Lus10019319 locus=Lus10019319.g ID=Lus10019319.BGIv1.0 annot-version=v1.0 ATGGGACAGTCAACTTCTTCATCGACCATCGTCACAAGTGGCCGCCTCTCCTCGCCGACGCCACTGCGTTTCCCGCTCGACGCATTCTCACACCGTCTCT CGCTGGACGCGAATTCGGAGATCCTGTCTTCTCTCCCGTCGATCTTCGCGAGGTTCGACTCCGTCACCAAGCTGGCCCTCCGCTGCGACCGGAAGTCGAT CAGCTTGGATGACGACGCGTTCCTGATGATCTCCGTCAAGTGCCCGAACCTCACGCGGCTGAAGTTGCGAGGATGCCGCGAGATCACGGATCACGGCATG GCAGCGTTCGCTCAGCACTGCAGGAGCTTGAAGAAGCTGTCCTGTGGATCCTGTTCCTTTGGCGCCAAAGGTATGAACGCTGTGCTTGAGAACTGTACCT CTCTTGAGGAGCTTTCGATTAAGCGGCTTAGAGGTATTCATGACGGTACTGATCTGATCGGAGTCGGAGCAGCTGCGGCTTCCTCCTTGAGATCGATCTG CTTGAAAGAGCTGGTCAACGGCCAATCGTTTGAACCGCTGGTGATTGGTGCGAGAAATCTTCGGTCCTTGAAGATTTTCAGGTGTGTAGGTGACTGGGAT AAAGTGCTTAAATTAAGAGCAAAACAAGAATCAGGTGGTAATGGTTCATTGGTTGAGATTCACCTTGAGAGGATTCAAGTAAGCGATGCAGGGCTAATCG GGATATCGAAATTCCCCAATCTTGAGATCCTCCACATAGTGAAAACCCCTGAATGTTCGAATTCAGGTCTCATTTCCGTTGCTGAGAACTGCAGGAAGCT TAGGAAGCTACACATTGATGGATGGAGGACAAATAGGATTAGCGACAATGGGTTAATAAGCATAGCTGAGCAATGCTCCAATTTGGAGGAGCTTGTCCTG ATTGGCGTAAACGCCACCCATCTGAGCTTGAGATTGATAGCTGCGAATTGCCGAAATCTCGAAAGATTAGCCCTTTGCGGGAGTGGAACCATCAGAGACG AGGAGATTGTTTGCATCTCCGAGAAATGCATGTCCTTGAAGAAGCTTTGTATCAAAGGATGTGCTATTTCAGATAAAGCCATTGCCACCCTCGCTTGGGG GTTCCCAAATCTGGTTAAGGTCAAGGTGAAGAAATGCAAAGGGGTGACGTGTGGGATCGTGGACTGGCTGCAGGAGCGTAAACCGAAGCTGGTAGTCGAC TTCAACGGAGTCCAGATCGAGATGTTGGTGGAAACTAGCGGTACCGATGCCGGAGTAGTACAGGATATGCAGGCTGATCAGTTTCTTCCTGTGTTGGATG CTAGAGTTAACATCGTTGAAGGTCCTTCATCGAACAATGCCTCTGCTGGGAGGATGGCAGCTTTTCGATCGACGATTGGGGATTTCGCAAGTAGGAACAT CGTCGCTTGCGCTTTCAGCCGATGGTCCAACAGTTCAGCCTAA
AA sequence Show only first row Show all	>Lus10019319 pacid=23141298 polypeptide=Lus10019319 locus=Lus10019319.g ID=Lus10019319.BGIv1.0 annot-version=v1.0 MGQSTSSSTIVTSGRLSSPTPLRFPLDAFSHRLSLDANSEILSSLPSIFARFDSVTKLALRCDRKSISLDDDAFLMISVKCPNLTRLKLRGCREITDHGM AAFAQHCRSLKKLSCGSCSFGAKGMNAVLENCTSLEELSIKRLRGIHDGTDLIGVGAAAASSLRSICLKELVNGQSFEPLVIGARNLRSLKIFRCVGDWD KVLKLRAKQESGGNGSLVEIHLERIQVSDAGLIGISKFPNLEILHIVKTPECSNSGLISVAENCRKLRKLHIDGWRTNRISDNGLISIAEQCSNLEELVL IGVNATHLSLRLIAANCRNLERLALCGSGTIRDEEIVCISEKCMSLKKLCIKGCAISDKAIATLAWGFPNLVKVKVKKCKGVTCGIVDWLQERKPKLVVD FNGVQIEMLVETSGTDAGVVQDMQADQFLPVLDARVNIVEGPSSNNASAGRMAAFRSTIGDFASRNIVACAFSRWSNSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	0	1
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	4.2	0.9181
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	4.5	0.9319
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	4.5	0.9321
AT3G47610			transcription regulators;zinc ...		Lus10023596 [exp]	4.7	0.9094
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	5.3	0.9197
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	6.5	0.9315
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	8.0	0.9255
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10000451 [exp]	9.6	0.9094
AT5G54850			unknown protein		Lus10011150 [exp]	12.2	0.9198
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	13.5	0.9089

Compare expression of checked genes

Lus10019319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.