Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50100 214 / 3e-66 SDN1 small RNA degrading nuclease 1 (.1) AT5G67240 213 / 6e-63 SDN3 small RNA degrading nuclease 3 (.1.2) AT5G05540 190 / 2e-56 SDN2 small RNA degrading nuclease 2 (.1.2) AT3G50090 167 / 2e-49 Exonuclease family protein (.1) AT5G25800 69 / 9e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011505 [exp] 546 / 0 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10019321 [exp] 424 / 2e-146 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 420 / 1e-144 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10010220 [exp] 73 / 3e-15 AT5G67240 54 / 5e-09 small RNA degrading nuclease 3 (.1.2) Lus10042779 [exp] 75 / 2e-14 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10028637 [exp] 73 / 5e-14 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018935 [exp] 73 / 6e-14 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029748 [exp] 65 / 2e-11 AT5G25800 707 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048000 [exp] 316 / 8e-105 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.005G186600 [exp] 77 / 1e-15 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10019320 pacid=23141416 polypeptide=Lus10019320 locus=Lus10019320.g ID=Lus10019320.BGIv1.0 annot-version=v1.0 ATGGACGAGAAACTTGCCACTGCGATCTCCGCCTCTCCGGCGAACTTTGTTGATCATATCATTGGATCGTATTCACGCCGGCAAGTGCTGCTGCAGTTTG CCAAACAGTCTTCCGACGAGATTTCACCTGAACAGAGGCTGGTTCATTTGACACTTGAGCATCCACTTTTCATGTCCAAGTATGCATTCCCTACCTATTA CGGAAAGGGTTGGTTGATGACTGAACCTTTCAAAGGATCCAATCTGGAAAGCTCTAAGAAGATGCTTGCTGTTGATTGTGAGATGGTTCTTTGCAACGAT GCTACTGATGCAGTAGTGAGAGTTTGCATCGTAGATTCTGATTTACAGAGATGCATGGAAAAGCTTTTGTCCAGAGGAAGAACCATTTTAGTGGGGCATG GGTTATATAATGACCTACTTGCATTGAAGATTGACCATATCAGAGTTATAGACACGTCACTCATCTTCAAAACTTCATATGGTCGTATGCCATCTTTACG CAATTTGTGCAAGACGATTCTGGGATACGAACTCCGCGAGGAAGGCGCTCCCCATGATTGCTTAGACGATACACGCACAACAATGAAGATTGTTCTGGCA ATGATGAAGCTTGGAATTGATAATGTGACTACAAATATTGTATCCGAAGACGAACTCTCAAAGCTACTCCTTCAGAAAATACCAAGCGCGGTACCTACTG AAGCACTACGAAGCATATTTCCTGAGAACTTAACCATTCAACTAAAGCCGCCAGTAAAGAGAGCTCAAAACAAGCATTACTCTATGCTCGCCGTCTTTAA GAATCCACGACAGGCACACGAAGCATTCGAGAAAGTCGATGGCTCCATTGACAAGGATTCTGCAGGACGGCCACAGAAGCTGGTTACGCTGGTGTTCGAC ACTGGGAGAATCGCCACTGTTTACGTGCGTAAAATGTTGCCCGAGATGATGACTTGCAACAGAAGTTATCATCACTGGATATAA
AA sequence Show only first row Show all	>Lus10019320 pacid=23141416 polypeptide=Lus10019320 locus=Lus10019320.g ID=Lus10019320.BGIv1.0 annot-version=v1.0 MDEKLATAISASPANFVDHIIGSYSRRQVLLQFAKQSSDEISPEQRLVHLTLEHPLFMSKYAFPTYYGKGWLMTEPFKGSNLESSKKMLAVDCEMVLCND ATDAVVRVCIVDSDLQRCMEKLLSRGRTILVGHGLYNDLLALKIDHIRVIDTSLIFKTSYGRMPSLRNLCKTILGYELREEGAPHDCLDDTRTTMKIVLA MMKLGIDNVTTNIVSEDELSKLLLQKIPSAVPTEALRSIFPENLTIQLKPPVKRAQNKHYSMLAVFKNPRQAHEAFEKVDGSIDKDSAGRPQKLVTLVFD TGRIATVYVRKMLPEMMTCNRSYHHWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019320 [exp]	0	1
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	1.4	0.7401
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	4.2	0.7061
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016175 [exp]	20.7	0.7092
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Lus10032111 [exp]	24.2	0.7042
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035123 [exp]	26.3	0.6934
					Lus10011286 [exp]	33.2	0.6453
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10039747 [exp]	36.2	0.6844
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	37.2	0.6869
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	42.4	0.6842
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	47.0	0.6714

Compare expression of checked genes

Lus10019320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.