Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67240 377 / 3e-122 SDN3 small RNA degrading nuclease 3 (.1.2) AT3G50100 345 / 2e-114 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 303 / 2e-97 SDN2 small RNA degrading nuclease 2 (.1.2) AT3G50090 230 / 6e-71 Exonuclease family protein (.1) AT5G25800 114 / 6e-27 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G15080 84 / 7e-18 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G48100 69 / 2e-12 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT3G27970 69 / 2e-12 Exonuclease family protein (.1) AT5G40310 65 / 4e-11 C2H2ZnF Exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011504 [exp] 881 / 0 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10011505 [exp] 571 / 0 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10019320 [exp] 424 / 1e-146 AT5G67240 214 / 2e-66 small RNA degrading nuclease 3 (.1.2) Lus10010220 [exp] 177 / 5e-53 AT5G67240 54 / 5e-09 small RNA degrading nuclease 3 (.1.2) Lus10018935 [exp] 117 / 8e-28 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10028637 [exp] 117 / 1e-27 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042779 [exp] 115 / 4e-27 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029748 [exp] 109 / 6e-25 AT5G25800 707 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011026 [exp] 85 / 4e-18 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048000 [exp] 527 / 0 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.005G186600 [exp] 121 / 4e-29 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G373500 [exp] 78 / 1e-15 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G215700 [exp] 67 / 1e-11 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4) Potri.017G073300 [exp] 59 / 4e-09 AT3G27970 577 / 0.0 Exonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10019321 pacid=23141313 polypeptide=Lus10019321 locus=Lus10019321.g ID=Lus10019321.BGIv1.0 annot-version=v1.0 ATGGACGAGAAACTAGCCGCCGCAATCTCCGCCGCTCCAAAGAACGTTCTGACCGACATTGTGAAGTTAGCGCAACGGCTAGGACGCGAGGGCACCAAAG GCAGCTGGAAGGAATTCCTCAATGTCTACGATACTCAGTCCGGCTCATCACTCAGTGATCCTGACAAGAGGTCTCGAGACGCTTTGGTTGCGTTCCTCCA AACATTTACCGGAGAAGATGAACAGAAGTTTGTTGCTAATGTATTTGGATCGTGTTCAAGCCGGCAAGTGTTATTGCAGGCTGCTAAAGAGTCTTCAGAC GATATTTCCCCTGAACAGAGGATGGTTCATTTAACACTTCAACACCCGTATTTCATGTCCAAGTATATGTTCCCTACTTATGAAAAGGATTGGTTGGTTT CGAAACCCTGTGAAGGATCCAAGACGAAAAGCTCAAGTAAGATGCTTGCTGTTGATTGTGAGATGGTTCTTTGCGAGGATGGTACTGATGGCTTAGTCAG AGTTTGTGTCGTGGATTCCGATTTACAGGTGAAGCTCGACGAAATGGTGAATCCTGATAAGGCAATAACAGATTATCGAACTGAAATTACTGGAATCAAT CCTGGAGATTTAGATAATGTTACATGTTCGTTAAGGAAAGTACAGAGACGCATGAAAAAGCTTCTATCCAAAGGAAGAACAATTTTAGTGGGACATGGGT TGCATAATGATCTACTTGCATTGAAGATCGACCATGCCAGAGTTGTAGACACATCATTTATCTTCAAAACTGAAGATGGTCGTGCACCGTCTTTACGTAA TTTGTGTAGGACGATTTTAGGTTACGAACTCCGAGAGGAAGGCGCTCCGCATAATTGTTTAGATGATGCACGTACCGCAATGAAAATTGTCATGGCGAGG ATGAATGGATTTGATAAAGTGATTCCAAAGATTGCGTCAGAAGTGAAGCATGTATCCAAAGATGAACAAGCAAAGCTTCTCCTTCACAAAATACCAAGCT CTGTACCTACTGAAGAGCTTCGAAGAATCTTTCCTGTGAACTTCACCATTCAACTAAAGCCACTTAAGCGAGCTGAAGGAAAGCATTACTCTGTGCTTGC CATCTTTAAAAATCTAAGCGAGGCACACGAAGCATTCGAGAAAGTCGATGGAGTCATTGACAAGGATACCGCTGGACGACCACAAAAGCTGGCTACACTC ACGTCCGACAAAGGAAAAGCCTCTACTCTCTATATACGTAAAATGTCGCCCGAGGGTTCCTCGCAGGATTCGCAGCCAAAGAGACCATTGGAAATCGACG ATCACATCAGCAGTCAAAAGAAGCAAAAGACTGATCGCTGCGATAGCTATCTGGAAGAGATTGAAAGACTGAAGCAGGAACTGAGAGCCAAGGATGAAGC GATTGAAAGGTTGAAGCAAGAACTGAAGGAGAGTGTTGTCAAGAATCCTTCGGCCGAGCAGTTGATAGAGATTGAGAAGTTGAAGAAGGAGATCGAGAAG TCGAAGAAGGAGATTCGAGCGAAAGACATTGAAATCGTTGCCAGTGACAAGATCATTGATATTCTTAAGGAGAAGTTGAAAGATAAAGAGGAGAGCAGAA AACGGTAG
AA sequence Show only first row Show all	>Lus10019321 pacid=23141313 polypeptide=Lus10019321 locus=Lus10019321.g ID=Lus10019321.BGIv1.0 annot-version=v1.0 MDEKLAAAISAAPKNVLTDIVKLAQRLGREGTKGSWKEFLNVYDTQSGSSLSDPDKRSRDALVAFLQTFTGEDEQKFVANVFGSCSSRQVLLQAAKESSD DISPEQRMVHLTLQHPYFMSKYMFPTYEKDWLVSKPCEGSKTKSSSKMLAVDCEMVLCEDGTDGLVRVCVVDSDLQVKLDEMVNPDKAITDYRTEITGIN PGDLDNVTCSLRKVQRRMKKLLSKGRTILVGHGLHNDLLALKIDHARVVDTSFIFKTEDGRAPSLRNLCRTILGYELREEGAPHNCLDDARTAMKIVMAR MNGFDKVIPKIASEVKHVSKDEQAKLLLHKIPSSVPTEELRRIFPVNFTIQLKPLKRAEGKHYSVLAIFKNLSEAHEAFEKVDGVIDKDTAGRPQKLATL TSDKGKASTLYIRKMSPEGSSQDSQPKRPLEIDDHISSQKKQKTDRCDSYLEEIERLKQELRAKDEAIERLKQELKESVVKNPSAEQLIEIEKLKKEIEK SKKEIRAKDIEIVASDKIIDILKEKLKDKEESRKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	0	1
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	1.4	0.9478
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	2.2	0.9089
AT2G40430			unknown protein		Lus10011462 [exp]	2.4	0.9224
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	2.6	0.9085
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	4.9	0.8892
AT5G12220			las1-like family protein (.1.2...		Lus10026818 [exp]	5.8	0.8810
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	7.2	0.9145
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	7.3	0.9295
AT2G28130			unknown protein		Lus10016147 [exp]	8.7	0.8964
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	9.8	0.9086

Compare expression of checked genes

Lus10019321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.