Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55160 103 / 1e-28 unknown protein AT2G19530 52 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011503 [exp] 180 / 8e-59 AT1G55160 130 / 6e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200200 [exp] 105 / 3e-29 AT1G55160 140 / 2e-42 unknown protein Potri.006G151200 [exp] 59 / 1e-11 AT1G55160 90 / 7e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019322 pacid=23141307 polypeptide=Lus10019322 locus=Lus10019322.g ID=Lus10019322.BGIv1.0 annot-version=v1.0 ATGAGTGAATCAGGTCCGAAGCTGTATACAAACAAGCCGAAGAAATCACAGCTGAAGCAATTCCAGGAGGGGAATCCGAAGTTGAAGAATGTATCCGCAC CACCTGTAAAAGCAGCAACTCCGGCGCCGCCTTCGTCGGAATCTTACAAGATGGGAGGAGGGTCTACTCCGCCGCCGCCTAAGGAGTCGTTTGCGAGGCG TTACAAGTTCATGTGGCCGCTTCTTTTGGCGGTGAATTTCACAGTTGGAGCTTACTTGTTCACGAGAACGACAAAGAAGAAGGAGGACACTGATCATCAT GGAACGTTGACGGAGAATGAGCAAAGGGAAGTGTTCAAGTGGGTGTTGGAAGAGAAGAGGAAGATGAATCCGAAAGATGAAGAAGAGAAGAAACGAATCG AAGAAGAGAAGGCTGTTCTTAAGCACTTTATTCGAGTCAAATCGATCCCTCCTCTCTAG
AA sequence Show only first row Show all	>Lus10019322 pacid=23141307 polypeptide=Lus10019322 locus=Lus10019322.g ID=Lus10019322.BGIv1.0 annot-version=v1.0 MSESGPKLYTNKPKKSQLKQFQEGNPKLKNVSAPPVKAATPAPPSSESYKMGGGSTPPPPKESFARRYKFMWPLLLAVNFTVGAYLFTRTTKKKEDTDHH GTLTENEQREVFKWVLEEKRKMNPKDEEEKKRIEEEKAVLKHFIRVKSIPPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55160			unknown protein		Lus10019322 [exp]	0	1
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	2.4	0.9348
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	3.5	0.9360
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	5.8	0.9399
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	8.0	0.9169
AT4G17960			unknown protein		Lus10000314 [exp]	10.4	0.9320
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	11.4	0.9240
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	12.7	0.9220
AT5G47090			unknown protein		Lus10035047 [exp]	15.9	0.9083
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10018196 [exp]	16.8	0.8790
AT2G40110			Yippee family putative zinc-bi...		Lus10040190 [exp]	17.0	0.9130

Compare expression of checked genes

Lus10019322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.