Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 144 / 8e-42 Plant protein of unknown function (DUF247) (.1) AT3G50170 127 / 2e-35 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 115 / 2e-31 Plant protein of unknown function (DUF247) (.1) AT3G50130 112 / 6e-30 Plant protein of unknown function (DUF247) (.1) AT3G50140 111 / 9e-30 Plant protein of unknown function (DUF247) (.1) AT3G50160 100 / 5e-26 Plant protein of unknown function (DUF247) (.1) AT3G50180 94 / 2e-23 Plant protein of unknown function (DUF247) (.1) AT3G50190 84 / 5e-20 Plant protein of unknown function (DUF247) (.1) AT3G44710 59 / 4e-11 Plant protein of unknown function (DUF247) (.1) AT3G47250 58 / 6e-11 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011501 [exp] 173 / 9e-53 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10020562 [exp] 75 / 4e-18 AT3G44710 139 / 4e-40 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 66 / 2e-13 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 61 / 6e-12 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 61 / 1e-11 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 59 / 3e-11 AT4G31980 251 / 5e-76 unknown protein Lus10038339 [exp] 53 / 5e-09 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 52 / 6e-09 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 52 / 2e-08 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047700 [exp] 150 / 4e-44 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 77 / 1e-17 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 75 / 1e-16 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 70 / 4e-15 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.003G206801 [exp] 69 / 9e-15 AT4G31980 261 / 3e-80 unknown protein Potri.003G208001 [exp] 67 / 5e-14 AT4G31980 229 / 1e-68 unknown protein Potri.003G209100 [exp] 67 / 5e-14 AT4G31980 255 / 7e-78 unknown protein Potri.019G108400 [exp] 67 / 6e-14 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 65 / 3e-13 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.003G159400 [exp] 64 / 4e-13 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10019324 pacid=23141376 polypeptide=Lus10019324 locus=Lus10019324.g ID=Lus10019324.BGIv1.0 annot-version=v1.0 ATGTCGCGTACCTGCATTACTGCGGGATCGTCGAGCATTGGATCGGGAGCGATGCATTACTGCGGGATCGTCGAGCATTGGCTCGGGAGCGATGCGGAGG TTGTCGATCTTTTCAACAGGCTGTGTCAGGAGGTGGTCTTCGACTTTAACGGGAGCTACCTGTCACGACTTTCGGAGGAAGTGAATCAGCACTACAACCA CCGGTGCAACGCTTGGCTTGCGAGCTTGAAGCATAAGTACTTTGGCAATCCCTGGGCGATCGTCTCGTTGTTCGCTGCTGTTGTTCTCTTGCTTCTTACT TTCACACAGACGTTCTACGGAGTCTATGCCTACTATCGGCCAGCAGCATCCTGA
AA sequence Show only first row Show all	>Lus10019324 pacid=23141376 polypeptide=Lus10019324 locus=Lus10019324.g ID=Lus10019324.BGIv1.0 annot-version=v1.0 MSRTCITAGSSSIGSGAMHYCGIVEHWLGSDAEVVDLFNRLCQEVVFDFNGSYLSRLSEEVNQHYNHRCNAWLASLKHKYFGNPWAIVSLFAAVVLLLLT FTQTFYGVYAYYRPAAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	0	1
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	2.2	0.8845
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041380 [exp]	7.7	0.7928
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	9.3	0.8329
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	10.9	0.8536
					Lus10042018 [exp]	11.0	0.7296
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	11.5	0.8062
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	13.4	0.8097
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	15.2	0.8075
AT5G46590	NAC	ANAC096	NAC domain containing protein ...		Lus10010294 [exp]	15.9	0.7714
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	16.0	0.8116

Compare expression of checked genes

Lus10019324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.