Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67210 316 / 6e-107 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT3G50220 304 / 3e-102 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT2G15440 206 / 1e-63 Protein of unknown function (DUF579) (.1) AT1G71690 137 / 8e-38 Protein of unknown function (DUF579) (.1) AT1G33800 132 / 1e-35 Protein of unknown function (DUF579) (.1) AT1G27930 128 / 2e-34 Protein of unknown function (DUF579) (.1) AT1G09610 126 / 6e-34 Protein of unknown function (DUF579) (.1) AT1G67330 120 / 1e-31 Protein of unknown function (DUF579) (.1) AT4G09990 119 / 3e-31 Protein of unknown function (DUF579) (.1) AT4G24910 103 / 5e-25 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009378 [exp] 579 / 0 AT5G67210 336 / 5e-115 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10006258 [exp] 321 / 1e-108 AT5G67210 458 / 4e-163 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10041596 [exp] 307 / 7e-103 AT5G67210 465 / 8e-166 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 211 / 6e-66 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 209 / 4e-65 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 134 / 9e-37 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 134 / 1e-36 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10002345 [exp] 135 / 2e-36 AT4G24910 236 / 6e-76 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 129 / 1e-34 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047000 [exp] 318 / 9e-108 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 317 / 2e-107 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 225 / 2e-71 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 225 / 3e-71 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 137 / 8e-38 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 136 / 3e-37 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 130 / 3e-35 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 130 / 3e-35 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 128 / 2e-34 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 125 / 2e-33 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10019326 pacid=23141351 polypeptide=Lus10019326 locus=Lus10019326.g ID=Lus10019326.BGIv1.0 annot-version=v1.0 ATGAAATACTACCACCATGGCTATGGTGGAAACACAAAGGCACTCGTCCTCCTCCGCCCTTACCTGAAAAAACAATCCCCTTACTCCAACTCTATCTGGC TCATCGCCTCCCTCTCCTTCTTCGTCCTCGCCTTCCTCATCATCTTCGTCCATACTCGAGACTCTCTCGTCGAAAACTCCCCCTCGTACCCCTCATCCAC ACACTCCCTAAGGAGAGTGCTGAGGAGATCATCATCTGCAACGACGAGGAGGAGGTTTGCAACAAAACACACCACCCCTTCCTCGCCAGATGATCTCCCT AGCGAAACGAACGACATCAGCAGCGTGAAGACAATCGACACTAGAACGATCGACACACTCCTCTACTACGCATCCATGTCGAACGAGACCTACCGCATGA AACACGAGGAGATGAGGAAGATCGTGGGCGTCCTCACGGAATGCTCCCCTCCGTGCAACTTCCTCGTCTTCGGCCTGAGCCCCGAGACCCTGCTCTGGCA CGCCCTGAACCAAAACGGCAGGACAGTATTCGTGGACGAGAATCGCTACTATGCAGCCTACTTCGAGGAGGTCCATCGTATCAGCGAGGTGTACGACGTT GTGTACACCACCAGGCTTGCTGACAAGGACGAGCTCTTAAAGGAGCTCCAAGGTTCCGAACAGGGGGACGATTGTCGTCCTGTCCAGAACTTGTTGTTCA CGGAGTGTAAGCTGGGGATCAACGACCTCCCGAACCATATGTACGATATAGATTGGGACGTAATCCTGGTGGACGGGCCGAGCGAGGCTGAGCCCGATGA TCCGGGGAGGATGATGCCGATATTCACGGCGGGTGTGTTCGCGAGGAGAAAGAAAGGCGGCGGAGGGAAGAGGATTACGCACGTGTTTTTGCATGATTAT TATGGGGACGTGGAGAAGGTTTACGGGGACGAGTTTTTGTGTCGGGAGAATTTGGTGGACGTTTCGACGAGTGGGATGTTGGCTCATTTCGTTGTGGAGA GGATGGAAGAAGGTGACGGCGTTAGCTCCTCGCAGTTCTGCCCGGGTCATCGCAGTGACTTGACAGCGGCTAGCTAA
AA sequence Show only first row Show all	>Lus10019326 pacid=23141351 polypeptide=Lus10019326 locus=Lus10019326.g ID=Lus10019326.BGIv1.0 annot-version=v1.0 MKYYHHGYGGNTKALVLLRPYLKKQSPYSNSIWLIASLSFFVLAFLIIFVHTRDSLVENSPSYPSSTHSLRRVLRRSSSATTRRRFATKHTTPSSPDDLP SETNDISSVKTIDTRTIDTLLYYASMSNETYRMKHEEMRKIVGVLTECSPPCNFLVFGLSPETLLWHALNQNGRTVFVDENRYYAAYFEEVHRISEVYDV VYTTRLADKDELLKELQGSEQGDDCRPVQNLLFTECKLGINDLPNHMYDIDWDVILVDGPSEAEPDDPGRMMPIFTAGVFARRKKGGGGKRITHVFLHDY YGDVEKVYGDEFLCRENLVDVSTSGMLAHFVVERMEEGDGVSSSQFCPGHRSDLTAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10019326 [exp]	0	1
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	5.7	0.7388
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	7.5	0.7384
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	9.5	0.7326
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	11.0	0.7326
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	12.2	0.7326
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	12.7	0.7183
AT4G37120		SMP2	SWELLMAP 2, Pre-mRNA splicing ...		Lus10007480 [exp]	13.5	0.6285
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	19.2	0.6737
AT1G27060			Regulator of chromosome conden...		Lus10012474 [exp]	27.5	0.5950
					Lus10000749 [exp]	33.3	0.6930

Compare expression of checked genes

Lus10019326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.