Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009375 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019329 pacid=23141309 polypeptide=Lus10019329 locus=Lus10019329.g ID=Lus10019329.BGIv1.0 annot-version=v1.0 ATGGAGAACGACGAGAATCCGCGTCCGGAGAAAATAGTAGAGGAAGTGGCAGAGGATCGAGAGGGAAGTGCGAAGAAGGAGGATGAGGTAGATGGAATTG AGAAAAGCGGAGGAAGTACATCCAGTAAGCGAGATTCGGAAGAGGACCGGACGAAATCGAGCGGCGAAGAAGAGGAACGGACGAAATCGAGCGGCGGAGA AGGGGATGCGGAAATGTTGAGCGATGAGAGGGGGACGAGCTATTCCCTTACTCCTACTAGTTGTATCCCGGATCCCCCAACCGAGTCAGATGATGCATAT TTTTCCGATAGTGGACCAGCCGCGAGATCGAGGTTCCGAAGGTATCGGTTGGATAAGAATCGGTATGTGAACAACTTTACGGTGGACGAGGCAGCGGATC AAAACTGGAGTGGCGAAGAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGATGGAACAGAGAAAAGCGAGATTAA CAGGAAGCACGGTGCGGACGAGGATGCAACGAAAGGCGATGTCCATAGGAAGAGATCACGTGGTGAACTCGAGATGAAAAGGACTGTCATGGAGGGAAAG AGCCAGAAGTGA
AA sequence Show only first row Show all	>Lus10019329 pacid=23141309 polypeptide=Lus10019329 locus=Lus10019329.g ID=Lus10019329.BGIv1.0 annot-version=v1.0 MENDENPRPEKIVEEVAEDREGSAKKEDEVDGIEKSGGSTSSKRDSEEDRTKSSGEEEERTKSSGGEGDAEMLSDERGTSYSLTPTSCIPDPPTESDDAY FSDSGPAARSRFRRYRLDKNRYVNNFTVDEAADQNWSGEEKKKKKKKKKKKKKKKKKRDGTEKSEINRKHGADEDATKGDVHRKRSRGELEMKRTVMEGK SQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019329 [exp]	0	1
AT5G02220			unknown protein		Lus10001570 [exp]	11.2	0.6702
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	17.1	0.6936
					Lus10018446 [exp]	17.7	0.6601
AT5G13470			unknown protein		Lus10005318 [exp]	23.2	0.6463
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	30.5	0.6639
AT4G04480			unknown protein		Lus10015548 [exp]	31.4	0.6500
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011823 [exp]	47.7	0.6126
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10042050 [exp]	49.6	0.6486
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	54.8	0.6147
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	55.9	0.6061

Compare expression of checked genes

Lus10019329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.