Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009375 [exp] 44 / 3e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019330 pacid=23141346 polypeptide=Lus10019330 locus=Lus10019330.g ID=Lus10019330.BGIv1.0 annot-version=v1.0 ATGAATGATGTGGTTGCTGAGATAGAGAAGGTTTGTCCAAAGCAGCAACCTATGGATAGCTCTTCTCCACAACAAGGTGTCTGGCCACTCCGTGTCGAGT GGGAACAGAGGACGGCGGAGAGGGAGCAGGAGTTGGAATGGAGGGCTGCGGAGAGGGAGCGGGAGTGGAACGAGCGATGTACTCGGATGGAGGCTGAGAT AGAGCGGTTGCAGGCGGAGTTGGCGGCAAAGGCTAAGAAAGTAAGTTACCGTTGA
AA sequence Show only first row Show all	>Lus10019330 pacid=23141346 polypeptide=Lus10019330 locus=Lus10019330.g ID=Lus10019330.BGIv1.0 annot-version=v1.0 MNDVVAEIEKVCPKQQPMDSSSPQQGVWPLRVEWEQRTAEREQELEWRAAEREREWNERCTRMEAEIERLQAELAAKAKKVSYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019330 [exp]	0	1
AT2G46520			cellular apoptosis susceptibil...		Lus10030433 [exp]	124.4	0.6195
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10002041 [exp]	124.6	0.6546
					Lus10000079 [exp]	156.7	0.6992
AT3G58110			unknown protein		Lus10002186 [exp]	160.0	0.6619
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	163.8	0.6655
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	169.0	0.6483
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	172.5	0.6767
AT3G49601			unknown protein		Lus10008501 [exp]	183.9	0.6603
AT3G44150			unknown protein		Lus10023845 [exp]	201.3	0.6281
AT4G40045			unknown protein		Lus10034155 [exp]	230.8	0.6418

Compare expression of checked genes

Lus10019330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.