Plant FIBer expression Database

Lus10019334 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70690 42 / 8e-05 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009370
[exp]
230 / 7e-77 ND /
Lus10019333
[exp]
185 / 6e-61 ND /
Lus10009372
[exp]
122 / 6e-36 ND /
Lus10019335
[exp]
117 / 2e-34 ND /
Lus10003443
[exp]
54 / 1e-09 ND /
Lus10006964
[exp]
54 / 4e-09 AT5G48540 38 / 0.008 receptor-like protein kinase-related family protein (.1)
Lus10012130
[exp]
52 / 4e-09 ND 39 / 4e-04
Lus10003442
[exp]
52 / 5e-09 ND 37 / 0.002
Lus10012129
[exp]
52 / 6e-09 ND /
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01657 Stress-antifung Salt stress response/antifungal
Representative CDS sequence
>Lus10019334 pacid=23141357 polypeptide=Lus10019334 locus=Lus10019334.g ID=Lus10019334.BGIv1.0 annot-version=v1.0
ATGGCTAGCATCACATCAGTGAAGATCATCATCATGCTACAACATTCACTAATAGTACCACTGTTGGTGCTATTGGTGCTAGCAACCTCGAACCTATCTC
GGGTTGCAGGCAATATTAGCGACCGAGTATGTTTTGGACCCTACGACGACCAGGGAACGAAGTGCAACCCTGTTCAGTGGAGCACCAACGCAACTCAAGA
GCGCATATTCAAAACGTTCAAGTATGATGTGTTTCAACACGGTAGCGGTTCGTTCTGCGTCCCTTTCGATATAAAAACTGGAAGGAATCAGACGCTGACC
GTGTACAGTTATTTCGCCTGCAACTACGACGAGTTTGTGGACGAAAGGGCTTGCGATCAGTGTAGGAATAGGGGGATAAGAGACCTTCGAGCACGGTGTC
GTAACCGTGCCGGTGCCGTTGTCAAAAGTGACCGTTGCTGTCTGAGGTATGAGACTTATAACATGTGTACTCACCATTACTAG
AA sequence
>Lus10019334 pacid=23141357 polypeptide=Lus10019334 locus=Lus10019334.g ID=Lus10019334.BGIv1.0 annot-version=v1.0
MASITSVKIIIMLQHSLIVPLLVLLVLATSNLSRVAGNISDRVCFGPYDDQGTKCNPVQWSTNATQERIFKTFKYDVFQHGSGSFCVPFDIKTGRNQTLT
VYSYFACNYDEFVDERACDQCRNRGIRDLRARCRNRAGAVVKSDRCCLRYETYNMCTHHY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G70690 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN ... Lus10019334
[exp]
0 1
AT1G21880 LYM1 lysm domain GPI-anchored prote... Lus10006200
[exp]
2.0 1.0000
AT3G16180 Major facilitator superfamily ... Lus10009506
[exp]
3.5 1.0000
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10027028
[exp]
3.5 1.0000
Lus10033149
[exp]
4.9 1.0000
AT1G29430 SAUR-like auxin-responsive pro... Lus10020441
[exp]
6.3 1.0000
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Lus10023215
[exp]
6.5 1.0000
AT3G14040 Pectin lyase-like superfamily ... Lus10023364
[exp]
7.0 1.0000
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Lus10003281
[exp]
7.5 1.0000
Lus10012394
[exp]
8.1 0.9772
AT3G24140 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (... Lus10007138
[exp]
8.9 0.9823

Lus10019334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.