Gene [FLAX] | FIBexDB

Lus10019335 [FLAX]

External link

JGI Phytozome v13

[genome browser]

Symbol

Arabidopsis homologues

Show only best Show top 10

No hit found

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10009372 [exp]	184 / 9e-61	ND	/
Lus10009370 [exp]	154 / 2e-47	ND	/
Lus10019334 [exp]	119 / 6e-35	AT1G70690	40 / 2e-04	PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1)
Lus10019333 [exp]	100 / 8e-28	ND	/
Lus10010417 [exp]	52 / 6e-09	ND	37 / 0.002
Lus10006964 [exp]	51 / 5e-08	AT5G48540	38 / 0.008	receptor-like protein kinase-related family protein (.1)
Lus10025477 [exp]	46 / 2e-06	ND	/
Lus10012130 [exp]	45 / 2e-06	ND	39 / 4e-04
Lus10019332 [exp]	44 / 3e-06	ND	/

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.004G023876 [exp]	39 / 0.0008	AT4G23180	489 / 5e-165	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)

PFAM info

Representative CDS sequence

Show only first row Show all

>Lus10019335 pacid=23141381 polypeptide=Lus10019335 locus=Lus10019335.g ID=Lus10019335.BGIv1.0 annot-version=v1.0

ATGGTGCCACTACTATTAATCATGTCCTTGTGCTCTCCGGTTACGAGCTCGGTCTTCGGCCCGATATGCGGAGGACCCATGGACAAGCATGGAAGGAGGT

GCAGCCCGGACAAGTTGCAGTCGAATGCGTCCCAAGAAGACATATTCAAGACGTTTGCAGATGGTGGGTTTGGCCAAGGCAGGGGCTACTCCAACTGCGT

GCCTTCCGAATACGAGTTGGAAAACGGCAAGAAGCTCACCGTGTATGGCTATTTCGCGTGCAACTACGGCGTGGACCTCGGTCTGGATGAGAGGTCCTGC

CGTCAGTGTATGCATCGGGGGGTCAAGAATTTGCGAGGGTGCCGTGACAGTGGCGGGGGAGTTTCTAGTAACGAGTATTGTTGTGTAAGGTATGAGATTT

ACAACATGTGTGCTCATTAA

AA sequence

Show only first row Show all

>Lus10019335 pacid=23141381 polypeptide=Lus10019335 locus=Lus10019335.g ID=Lus10019335.BGIv1.0 annot-version=v1.0

MVPLLLIMSLCSPVTSSVFGPICGGPMDKHGRRCSPDKLQSNASQEDIFKTFADGGFGQGRGYSNCVPSEYELENGKKLTVYGYFACNYGVDLGLDERSC

RQCMHRGVKNLRGCRDSGGGVSSNEYCCVRYEIYNMCAH

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019335 [exp]	0	1

Lus10019335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.