Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23380 837 / 0 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT4G02020 328 / 9e-99 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT1G02580 214 / 8e-59 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT5G42400 91 / 2e-18 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT5G53430 90 / 3e-18 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 90 / 5e-18 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 88 / 1e-17 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G76710 87 / 1e-17 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT4G30860 86 / 5e-17 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT3G61740 84 / 3e-16 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009369 [exp] 1460 / 0 AT2G23380 804 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10041386 [exp] 212 / 2e-57 AT4G02020 489 / 9e-161 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Lus10025172 [exp] 97 / 3e-20 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 96 / 8e-20 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016600 [exp] 87 / 1e-17 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10012626 [exp] 87 / 3e-17 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10026725 [exp] 87 / 3e-17 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 87 / 4e-17 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10010121 [exp] 87 / 4e-17 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045800 [exp] 1057 / 0 AT2G23380 1063 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.005G140200 [exp] 1042 / 0 AT2G23380 1042 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.014G120100 [exp] 515 / 7e-170 AT4G02020 877 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.002G195700 [exp] 349 / 4e-106 AT4G02020 883 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.002G001000 [exp] 100 / 5e-21 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 96 / 5e-20 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 92 / 3e-19 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.014G098400 [exp] 89 / 9e-18 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.015G014300 [exp] 88 / 2e-17 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 88 / 2e-17 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10019336 pacid=23141317 polypeptide=Lus10019336 locus=Lus10019336.g ID=Lus10019336.BGIv1.0 annot-version=v1.0 ATGGCGTCGAAGGCGTCTCCGTCGGCTTCCGCCAGTAGATCGGGGTCTCTCAAGGACACTTCGATGGAAAAAGCGGAAGAGTCAGGTCCAACGAGTGAGG AGATTGGATCAATTATCGAATCGCTGAAAACGCTTGTGGCGGATGAACGGTTTGTTTCTATAAAGGAAAGGATGAAAGAAAATAGAAACAAACTGGCTAG TGTCACCAGCCATCTACAGAAACTGTCCATGGAAAGAAGAAACAGCTGGATTAACATTGGCGAAGCTAGTCAAGATCTGCTGAAGAAGAGGCAAGATGAA GCAGTCGGGATGCATAGTGGGTTTGGTATTAGTAATGGTGATAGAGATAGTGACAGCTATCAAGAAGACTCTCATGGTTCTACGGCTGTTCTTCTGGGAA CTAGTATTCCTCCAGGGAAGAATTCCGTTAGGCCGATTAAGCTTCCAGGAGTGAAGAAGTTGCCTCCTTATACCACCTGGATATTTCTGGACAGAAATCA GAGGATGACAGAAGATCAATCAGTGGTGGGCCGGAGAAGGATTTATTATGATAGTGGTGAAGCAGTTATTTGTAGTGACAGTGAGGAGGAAGCTGTTGAT GAAGAAGAGGAAAAAAGATTTTTTCTGTCGTCAGAAGATTATATTATACGCATGACCCTAGATAAAACTGGATTATCAAATGGTGCGCTCCAATCCTTGG CGGAATGTCTGTCCAGAAGTAAAGATGAAGTGAAGGCAAGATATGAAAGTCTAACCAAGGAAGAGAAACCTTCAGTGGATTCCATGGATGTGGGCAGTGA AACACAAACAGTGAATTCTATTCTTGATAAGGATCTGGAAGCTGCTTTGGATTCTTTTGACAACTTATTTTGCCGGCGTTGTCTTGTCTTCGATTGCAGA TTGCACGGATGCTCACAGGATCTCGTATTTCCAGTTGAGAAACCACTTCCATGGAACCATCCAGACATAGAAAATGTTCCATGTGGTTCCCATTGCTACA AATCGGTGTCGAAGTCAGGGAAATTGGTTACTTTAAACTCGCCTGAGCAGCTTAGTGATACAAAAGAAAACTCTCTTCAGCCATCTGGCACTGCTGGGAT TCGCATGTCTGTGAGGAATAAATCTACTTCATCTACTCGAAAGAAAGTCAAGCCCTCCCAAAGTGAAAGTGCCTCTTCAAATGTCAAAAACATGTCAGAG AGTAGTGACTCAGAGATTGGACCCCAACATGATACTTCTTCCACTGGCCATTTGTCACCCTCCAAGAATAATATTATTGGAAAGGGTGGCATTTCTCACA GGAACAGCAAGCGAGTGGCTGAACGTGTTCTGAGTTGCATAAAGAAAAGGCAGAAGAAGTTGATAGGATCTGATTCCGATTCTGTCGCTAGTGGAGGTCT TTTGGGAGGTGATGCAACCAGTCCACATAAGGAAGATGAAGATGCCACTTCTTCTTCCAAAAAGGCAAGAAAATCTTCAAACACTGGGAGGTCTAGGAAA ACAGAGTTTTCAGCTCATCAAGTGCAAGGCGAAGTATCAAGCCAGATGTGCACTGATCCACCTGGAAGTAGTAGTGATGACACCTTAAGGAAAGATGACC ATGTTGATGGAAACAAATGTAATCTGGAGTCGAATCATAACCTGTCTTGGAAACCCTTTGAAAAAAGTATGTTTGAGAAAGGTGTGGAAATTTTTGGCTG GAATAGCTGTCTAATTACTAGGAATCTATTAAATGGTTTAAAGACGTGCACGGAAGTTTATCATTACATGACACGAGGAGACAACAAACTAGGCTGCCAA GCAGGTGATGCTGCAAATTCTCTTGGCGAAGGCTATTCCAAGTTTGAACATCAAGGCAATAATGAAGTTAGGAGAAGATCAAGGTTTTTACGCCGAAGAG GTAAAGTTCGCCGTTTGAAGTATTCATGGAAGTCTACAGCTTACCATTCTATCCGAAAACGGATAAGTGACAAAAAAGATCAACCGTGCCGCCAGTACAA TCCTTGTGGCTGCCAAGCAGCTTGTGGAAAGCAGTGCGCTTGCTTGCTGAATGGCACTTGCTGTGAGAAGTATTGTGGTTGTGGCGATGGCTCACTTGGT GTTCCGAATCAAAGCGGAGACAATTACGAGTGCCGGAATATGAAACTTCTTCTGAAACAACAGCAAAGGGTTTTACTTGGAAGATCCAATATATCTGGCT GGGGAGCATTTCTGAAGAATAGCGTCGGTAAGCATGATTACCTCGGCGAATACACTGGAGAGTTGATATCACATAGGGAAGCAGACAAGCGTGGCAAGAT TTACGACCGCGAAAACTCGTCATTCCTCTTCAATTTGAATGATCAGGCATATGGTCTTTCATCCCAACTTTTATTCGTCCTTGATGCTTACCGGAAGGGC GACAAGTTGAAGTTTGCCAACCATTCCCCTGATCCAAACTGCTACGCCAAGGTGATCATGGTTGCAGGAGATCACAGAGTGGGGATATTCGCCAAAGAAA GAATTGGTGCTGGCGAGGAGCTTTTCTACGATTACCGTTACGAACCAGACAGAGCTCCTGCCTGGGCAAGGAAGCCCGAAGCATCCGGGTCGAAAAGGGA AGAGACGGGTCATACAAGTGGCCGAGCCAAGAAGCTGGCTTGA
AA sequence Show only first row Show all	>Lus10019336 pacid=23141317 polypeptide=Lus10019336 locus=Lus10019336.g ID=Lus10019336.BGIv1.0 annot-version=v1.0 MASKASPSASASRSGSLKDTSMEKAEESGPTSEEIGSIIESLKTLVADERFVSIKERMKENRNKLASVTSHLQKLSMERRNSWINIGEASQDLLKKRQDE AVGMHSGFGISNGDRDSDSYQEDSHGSTAVLLGTSIPPGKNSVRPIKLPGVKKLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDSGEAVICSDSEEEAVD EEEEKRFFLSSEDYIIRMTLDKTGLSNGALQSLAECLSRSKDEVKARYESLTKEEKPSVDSMDVGSETQTVNSILDKDLEAALDSFDNLFCRRCLVFDCR LHGCSQDLVFPVEKPLPWNHPDIENVPCGSHCYKSVSKSGKLVTLNSPEQLSDTKENSLQPSGTAGIRMSVRNKSTSSTRKKVKPSQSESASSNVKNMSE SSDSEIGPQHDTSSTGHLSPSKNNIIGKGGISHRNSKRVAERVLSCIKKRQKKLIGSDSDSVASGGLLGGDATSPHKEDEDATSSSKKARKSSNTGRSRK TEFSAHQVQGEVSSQMCTDPPGSSSDDTLRKDDHVDGNKCNLESNHNLSWKPFEKSMFEKGVEIFGWNSCLITRNLLNGLKTCTEVYHYMTRGDNKLGCQ AGDAANSLGEGYSKFEHQGNNEVRRRSRFLRRRGKVRRLKYSWKSTAYHSIRKRISDKKDQPCRQYNPCGCQAACGKQCACLLNGTCCEKYCGCGDGSLG VPNQSGDNYECRNMKLLLKQQQRVLLGRSNISGWGAFLKNSVGKHDYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQAYGLSSQLLFVLDAYRKG DKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERIGAGEELFYDYRYEPDRAPAWARKPEASGSKREETGHTSGRAKKLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	0	1
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	4.9	0.9374
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	4.9	0.9440
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10021418 [exp]	5.3	0.9366
AT3G03130			unknown protein		Lus10009977 [exp]	6.6	0.9404
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	12.2	0.9357
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	12.5	0.9312
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	13.6	0.9301
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	15.2	0.9312
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	15.6	0.9264
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	15.9	0.8858

Compare expression of checked genes

Lus10019336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.