Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23420 946 / 0 NAPRT2 nicotinate phosphoribosyltransferase 2 (.1) AT4G36940 922 / 0 NAPRT1 nicotinate phosphoribosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009367 [exp] 1155 / 0 AT2G23420 955 / 0.0 nicotinate phosphoribosyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139800 [exp] 1006 / 0 AT2G23420 981 / 0.0 nicotinate phosphoribosyltransferase 2 (.1) Potri.007G045400 [exp] 1001 / 0 AT2G23420 972 / 0.0 nicotinate phosphoribosyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04095 [flax] [poplar] NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) family
Representative CDS sequence Show only first row Show all	>Lus10019337 pacid=23141377 polypeptide=Lus10019337 locus=Lus10019337.g ID=Lus10019337.BGIv1.0 annot-version=v1.0 ATGGAGGCAGAACCGAATCATCATTGTTTTCTTCCGAATGGAGAAACGGTGGTGGTAAGTCAGGTGATGGATAGTCCTACTAATCCGATGGTTACTCCTC TTTTGACGGATCTCTATCAGTACACCATGGCGTACGCTTACTGGAAAGCTTCCAAGCATAACGATCGAGCTGTGTTTGATTTGTACTTTCGGAGGAATCC GTTCGGAGGAGAGTACACGGTGTTTGCTGGTCTTGAAGAATGCATCAAGTTCATAGCTAATTTTAAGATGACTGAGGATGAGATATCGTTCATCCGTGAG AGCCTGTCTGGTTCATGCGAGGATGGTTTTTTTGATTATCTTAGAAACCTTGATTGCTCTGAAGTAGAAGCCTATGCCATATCGGAGGGGTCAGTTGTCT TCCCAAAGGTACCACTGATGAGAATTGAAGGACCAGTTGCTGTTGTTCAACTATTGGAAACACCGCTACTAAATCTCGTCAATTTTGCGTCATTAGTTAC AACAAATGCAGCACGGCATCGGTTTGTTGCTGGGAATTCAAAAATGCTACTTGAGTTTGGACTTCGAAGGGCACAGGGACCTGATGGTGCCATGTCCGCA TCAAAGTACTGCTACATTGGAGGATTTGATGCAACAAGCAATGTTGCTGCTGGACGGTTATTTGGCATACCCCTTCGTGGAACACACTCCCATGCTTTTG TCAGCTCATTTATGAGTCCAGATGAGATCATAGATAAATCTCTGAAAAGCTCTGATGGCTCAACTAGATGTGAAGATTTTGTCAGTTTGGTTCAGAGCTG GTTAAACAAAATACAGTGGTCGAACTCATTCAGCGGTATGTTCGGCGAGACTAACCATAGTGAGCTAGCAGCTTTTGCTTCATACGCTTTGGCATTCCCA GGGAATTTTCTAGCTCTTGTAGACACATACGACGTTATGAGGAGCGGGATCCCAAACTTTTGTGCAGTTGCTTTGGCACTGAACGATCTTGGGTATAAAG CAGGTGGCATCAGACTAGATTCCGGTGACTTGGCGTATCTATCATGCGAGGCTAGGAAATTTTTCCAAACCATTGAGAAGGAATTCTCTGTTCCTGGTTT TGGGAAAATGAACATCACTGCCAGTAATGATCTCAATGAGGAAACTTTAGATGCTTTGAATAAACAGGGGCATGAAGTAGATGCATACGGGATCGGCACC TATCTAGTCACCTGCTACTCTCAAGCTGCTCTAGGCTGCGTCTTCAAGCTTGTTGAGATAAATGGACAGCCTCGAATCAAACTTTCTGAAGACGTCTCAA AGGTTTCGATACCGTGTAAGAAACGTTGCTACAGATTGTATGGTAAAGAAGGATATGCACTGGTGGACATAATGACCGGAGAAAATGAAGCTGTTCCAAA GGTCGGAGAGAGGCTACTGTGCCGTCATCCTTTCAATGAGTCCAAGAGGGCGTTTGTTGTCCCCCAGAAGGTGGACGAGCTCTTGAAGTGTTACTGGCCT GGTACTTCAGGTAAACCGAGAGTGGAGTTGCCTTCTCTAAAGGAAACTAGAGAACGCTGCATCAACCAGCTTGATCAAATGCGATCAGACCACATGAGGA GGTTGAACCCGACACCGTACAAGGTGAGCGTGAGCGGCAAACTTTACGATTTCATCCATTTCCTGTGGCTAAACGAGGCCCCTGTTGGAGAGCTGCAGTG A
AA sequence Show only first row Show all	>Lus10019337 pacid=23141377 polypeptide=Lus10019337 locus=Lus10019337.g ID=Lus10019337.BGIv1.0 annot-version=v1.0 MEAEPNHHCFLPNGETVVVSQVMDSPTNPMVTPLLTDLYQYTMAYAYWKASKHNDRAVFDLYFRRNPFGGEYTVFAGLEECIKFIANFKMTEDEISFIRE SLSGSCEDGFFDYLRNLDCSEVEAYAISEGSVVFPKVPLMRIEGPVAVVQLLETPLLNLVNFASLVTTNAARHRFVAGNSKMLLEFGLRRAQGPDGAMSA SKYCYIGGFDATSNVAAGRLFGIPLRGTHSHAFVSSFMSPDEIIDKSLKSSDGSTRCEDFVSLVQSWLNKIQWSNSFSGMFGETNHSELAAFASYALAFP GNFLALVDTYDVMRSGIPNFCAVALALNDLGYKAGGIRLDSGDLAYLSCEARKFFQTIEKEFSVPGFGKMNITASNDLNEETLDALNKQGHEVDAYGIGT YLVTCYSQAALGCVFKLVEINGQPRIKLSEDVSKVSIPCKKRCYRLYGKEGYALVDIMTGENEAVPKVGERLLCRHPFNESKRAFVVPQKVDELLKCYWP GTSGKPRVELPSLKETRERCINQLDQMRSDHMRRLNPTPYKVSVSGKLYDFIHFLWLNEAPVGELQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10019337 [exp]	0	1
AT5G52580			RabGAP/TBC domain-containing p...		Lus10006646 [exp]	6.2	0.7611
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	9.5	0.7306
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	15.6	0.6933
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	21.8	0.7527
AT5G36930			Disease resistance protein (TI...		Lus10001366 [exp]	37.7	0.7235
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	42.1	0.7194
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	51.0	0.7410
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	53.7	0.6974
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	59.7	0.7134
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	60.3	0.7139

Compare expression of checked genes

Lus10019337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.