Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67100 1608 / 0 ICU2 INCURVATA2, DNA-directed DNA polymerases (.1) AT5G63960 159 / 5e-39 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) AT1G67500 98 / 4e-20 ATREV3 recovery protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009366 [exp] 2626 / 0 AT5G67100 1807 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10033513 [exp] 168 / 6e-42 AT5G63960 1785 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10020862 [exp] 146 / 5e-35 AT5G63960 1218 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10029911 [exp] 99 / 3e-20 AT1G67500 1431 / 0.0 recovery protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045300 [exp] 1846 / 0 AT5G67100 1734 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Potri.005G065800 [exp] 162 / 6e-40 AT5G63960 1817 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Potri.013G022200 [exp] 96 / 2e-19 AT1G67500 1426 / 0.0 recovery protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12254 [flax] [poplar] DNA_pol_alpha_N DNA polymerase alpha subunit p180 N terminal PF08996 [flax] [poplar] zf-DNA_Pol DNA Polymerase alpha zinc finger CL0194 [flax] [poplar] DNA_pol_B-like PF00136 [flax] [poplar] DNA_pol_B DNA polymerase family B CL0219 [flax] [poplar] RNase_H PF03104 [flax] [poplar] DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain
Representative CDS sequence Show only first row Show all	>Lus10019338 pacid=23141411 polypeptide=Lus10019338 locus=Lus10019338.g ID=Lus10019338.BGIv1.0 annot-version=v1.0 ATGGAAGGCGAAGAGCAGCACCCAGTAGTCGCCGGAAGGCGGCGGAGCAGGGGCGGCGGCAACACGGCAAGGGCGGAAGCGTTGGAGCGGCTCAAAGCCC TCCGCCGCGACGGCCGGAGATCCGACAGAGGATACGAGATCAAGGCAGAGAATCCTATATACGACACGATGCCCGAGGAGGAGTACGCCAAGCTGGTCGC TCGTCGGAAAGAGGAAGCACACGGGTTTATAGTCGACGACGAAGGGATCGGCTATGGCGACGAGGGAGATGAAGAGGATTGGTCAAAGGCCGGACTCCCC ACTTCCTCCGACGAGTCCGACAGTGGCGGCGAACGTAGCAGCAGACGGAAGAGAAAGATGGCGGAGAGGAAGGAGAAAGAGCCTCAGCAGAAGAAGGTTC ATCCTTCTTCTCTGACTGCTGCTGCCGCGATGATGGGGAAACAGAAGCTTTCGACCTACTTTAATTCTACTGCGATGTTCAGGAATCGTGATTCGGATAA GGCCAAGAGTCTTGATTGCGATAGTATTGTGGATGATGTGATTGCCGAATTCGCACCTGATGAAGCTGATAGAGAAAAACGAAGGAGGGGACATCCAGTA GTGGCGAGTAATGCTTCGCAAGTTAAGAGCGAGTATCTGGTTAATGTAGAGAATAAGGTTTCTGTCAATGTCAGCGATCCTGTTATTGATTCTTTAGAGA ATAATGGCGGTGGTGATGAGAAAGAGAGCCTGGATGTTGATGTAAAGGAGGTGGAGGAGGAAAACGGAGTTGAGGATGAGGGATCTCTTGTCGGAGTTGA ATTGAAATCGGAGAATGTTTGTGAGGTGAAGTCGGAACCAGTGGTGAAGGTGGAGGAGGCAAGGAGAACTCTAAATGCGAAGATGAGTACAGAGAAAAGA GATCCTAAATTAAGTGCCACAGCTGGATGGGAGGAAGTGAAACGGAGTGGTGGAAATGGTGGAATTACAGAGGAGAATAACAGTGTGTCACGTAGTGAAG AGCAACCAGAGTTTGAAGTGGATTCAGACGGGTCTTTACCATTTTACATACTTGATGCTCATGAAGAGGCATTTGGAGCTAACCGCGGCACTGTTTTTCT CTTCGGAAAGGTCAAAGCTGGGAATGTATACCATAGTTGCTGCGTGTTAGTAAAGAACATGCAGAGATGTGTTTATGCCATTCCTAACAGTTCAATATTT CAAACTGATGAGATGCTTCGGCTAGAGAAAGACGTTGAAGAGTCACGGATTTCCCTTGCAGAATTCCGTAGAAAGCTTCAGGACGTGGCATATGGATTAA AGGAGGAGGTGGCGAACCAACTAGCAAACCTCAAAGTGTCGAGTTTTTGCATGACTCCTGTCAAGAGAAAGTATGCGTTTGAGCGATCTGATGTTCCTCT TGGGGAGAATTATGCACTAAAGATTAATTACTCATTCAAGGATTCGCCACTTCCTACAGACCTAAGAGGAGAAACCTTTACTACTTTGCTTGGAACTAAT ACCAGTGCTTTGGAGCTTTTTCTTGTAAAAAGAAAGATCAAGGGACCCACATGGTTATTGATTCCAAAGTTCTCAACCCGCCAAACCTCTCAGAAGGTAA GCTGGTGCAAGTTTGAAATTGTTGTTGACTTCCCGAAAGACATCCAGACTGCATCATCATCAAAAATTACAGCAGAGATTCCTCCAGTGGTGGTTACAGC AATAAATTTGAAAACTATCTTAAATGAAAAGAAGAATGTGAACGAAATAGTTTCTGCATCTGTCGTCTGCTGTCACAAGGCCAAGATTGATACTCCTATG CTGGCTCCAGAACGGGAGAAACCTGGAATGGTCAGTCATTTTACTGTTGTCCGCAAACTCGATGGAGGTATATTTCCGATGGGTTTTTCGAAGGAGCTGG CTGATAGAAACATGAAGGCTGGGTCTCGGTCGACTATCTTATCCATGGAGCCCAGTGAAAGGTCTTTGCTGAATCGTCTGATGATCGAGTTGCATAAGTT AGACAGCGACATTCTTGTTGGACATAACATATCTGGTTTCGACTTGGACGTTCTCCTCCATAGAGCACAGCGTTCTACGATGCCCAAGCTTTCAAAACCA AATGGTACCAGAGCTAGCCAGGGAATCCTGTCTTGTTTATCTGGTCGGCTTTTATGCGATACATATATATGCTCCCGCGATCTACTGAAAGAGGTTAGCT ATTCTTTGACACAACTTGCAAATACTCGACTGGGTAAACATCGGAAAGAGGTTGCTCCTCATGATATTCCCAAAATGTTCCAAACCTCTGAATCTCTTAT TGAACTAATTCAATTGGGTGAGACAGATGCATGGCTTTCTATGGAACTTATGTTTCACCTAAGTGTTCTTCCACTCACACGCCAACTAACTAATATCAGT GGTAACCTTTGGGGGCAAACTTTCCAAGGTGCTAGGGCATTGAGAGTGGAGTATCTTCTATTGCATGCATTTCATTCAAAGAAATATATTGTGCCTGACA AACAATATTCCTCTCACGCAAAGGAAGCAAACATTACGAAGAGAAAAATGCACCACAACACTGACAATGTGGTTGCTGAGGAGTTGGAGGTTGAGGACAT CGATTTTGAAAATGAACGTCCAGAAAATTCTCATAGAAAAGGGAAAAAGGGTCCTGCCTATGCAGGTGGCTTAGTTCTGGAGCCAAAGAAGGGCTTGTAT GACAAATATGTTTTGCTTTTGGATTTCAATAGTCTGTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTGGAAAGATCTTCAGAGGGAG TATCTTCACGTCTACCTTCCAGCAAGACAACTGGAGTTTTGCCTGAGCTTTTGAAAAATTTAGTTGAGAGGAGGAGAATGGTAAAGAAATGGATGAAGAG CGCATCTGGCCTTAAAGTCCAACAGCTTGACATTCAACAACAAGCACTGAAACTAACTGCTAACAGCATGTACGGATGTCTTGGATTTTCAAACTCAAGA TTTTATGCTAAGCCTCTTGCAGAGCTTATTACTCTACAAGGAAGGGAGATTCTACAGAGTACCGTTGATCTAGTTCAACACAATCTGAACTTTGAGGTTA TCTATGGTGATACAGATTCGATCATGATTTACAGTGGACTAGATGATATAGCAAAAGCAAAAGCAATTGCCGGGAAGGTTATTCAGGAGGTGAACAAGAA GTACCGGTGTTTAGAAATAGATCTCGATGGCCTGTACAAGAGAATGCTGCTACTGAAAAAGAAAAAGTACGCAGCTGTGAAGATTCAGTTCAAGGATGGG ACACCATACGAGGTTAGAGAGTGCAAGGGTATTGACATGGTTCGTCGTGACTGGAGCTTGCTATCCAAGGAGGTGGGAGGTTTCTGTTTGGATCAGATCT TATCGGGGAGGTCGTGTGAAGATGTGGTGGAGTCGATACATAGTTATCTTATGAAGGTGAGGGATGAGATGAGGAGTGAACAGGTAGAACTCAAGCAGTA TGTTATTACTAAGTCATTAACGAAACCACCTGAAGCATACCCAGATGCTAAAAACCAACCCCATGTTATGGTGGCACTCAGATTGAAGCAAAGTGGTTAC ACAGCTGGTTGCTCAGCTCATGACACAGTCCCATACGTGATTTGCATCGAGCAGGGTGCTAGTTCAGGAGGTTCAGCCGGGATTGCTCAGCGAGCAAGGC ACCCTGATGAGTTGGAAAAAGATGATGGGAAATGGATGATTGACATTGATTACTACTTGTCTCAACAAATTCATCCAGTGGTTTCTCGTCTATGTGCTCC AATTCAGGGTACAAGTCCAGAGCGCTTGGCTGATTGCTTGGGGCTCGACTCGTCTAGGTTCCGGAGTAGATCTAACGAAGCTGCAGATAGTGATCCTTCC AGCTCACTTGTGTTTGCTGGGAATGATGAGGATAGATACCAGAGTTGCGAACCATTGACCTTGTCCTGTCCAAGCTGCTCCTCTACCTTTGACTGTCCTG ATATCTTCAGTTCTATTTGCAAGTCAATAAATGGAACAACGACAACAGAAGCGCAGCCAGAAGAATCGATATCCAATTTCTGGCGCACACTGAGGTGCCC GAAATGTCCAGAAGAAGGGAATCTTGGCAGAGTATCTCCAGCAACGATAGCCAACCAGGTTAGAAGGCAAGCAGAGAGTTTTGTTTCCACTTACTATAAG GGCATAATGATGTGTGACGATGAAACGTGCAAGCATACGACGAGGAGTCTGAATCTGAGGTTAGTTGGAGAATCAGAGAAAGGGACAGTTTGTCCAAACT ATCCCAGGTGCAACGGCCGGCTTGTGAGGAAGGAGCAGCAGCAGATGGAAGTGAGTAAGAGATTTGCGTTGGAGGAAGAACGGAGGAAAATTCGGGGAGT GGTTGAGATGGCGGTGTCGACTGTGGAGAAGATGAGAGATCGGTGTGCCTATGGATGGGTGCAGCTTAACGACTTCACTGTTACAGTCTGA
AA sequence Show only first row Show all	>Lus10019338 pacid=23141411 polypeptide=Lus10019338 locus=Lus10019338.g ID=Lus10019338.BGIv1.0 annot-version=v1.0 MEGEEQHPVVAGRRRSRGGGNTARAEALERLKALRRDGRRSDRGYEIKAENPIYDTMPEEEYAKLVARRKEEAHGFIVDDEGIGYGDEGDEEDWSKAGLP TSSDESDSGGERSSRRKRKMAERKEKEPQQKKVHPSSLTAAAAMMGKQKLSTYFNSTAMFRNRDSDKAKSLDCDSIVDDVIAEFAPDEADREKRRRGHPV VASNASQVKSEYLVNVENKVSVNVSDPVIDSLENNGGGDEKESLDVDVKEVEEENGVEDEGSLVGVELKSENVCEVKSEPVVKVEEARRTLNAKMSTEKR DPKLSATAGWEEVKRSGGNGGITEENNSVSRSEEQPEFEVDSDGSLPFYILDAHEEAFGANRGTVFLFGKVKAGNVYHSCCVLVKNMQRCVYAIPNSSIF QTDEMLRLEKDVEESRISLAEFRRKLQDVAYGLKEEVANQLANLKVSSFCMTPVKRKYAFERSDVPLGENYALKINYSFKDSPLPTDLRGETFTTLLGTN TSALELFLVKRKIKGPTWLLIPKFSTRQTSQKVSWCKFEIVVDFPKDIQTASSSKITAEIPPVVVTAINLKTILNEKKNVNEIVSASVVCCHKAKIDTPM LAPEREKPGMVSHFTVVRKLDGGIFPMGFSKELADRNMKAGSRSTILSMEPSERSLLNRLMIELHKLDSDILVGHNISGFDLDVLLHRAQRSTMPKLSKP NGTRASQGILSCLSGRLLCDTYICSRDLLKEVSYSLTQLANTRLGKHRKEVAPHDIPKMFQTSESLIELIQLGETDAWLSMELMFHLSVLPLTRQLTNIS GNLWGQTFQGARALRVEYLLLHAFHSKKYIVPDKQYSSHAKEANITKRKMHHNTDNVVAEELEVEDIDFENERPENSHRKGKKGPAYAGGLVLEPKKGLY DKYVLLLDFNSLYPSIIQEYNICFTTVERSSEGVSSRLPSSKTTGVLPELLKNLVERRRMVKKWMKSASGLKVQQLDIQQQALKLTANSMYGCLGFSNSR FYAKPLAELITLQGREILQSTVDLVQHNLNFEVIYGDTDSIMIYSGLDDIAKAKAIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKIQFKDG TPYEVRECKGIDMVRRDWSLLSKEVGGFCLDQILSGRSCEDVVESIHSYLMKVRDEMRSEQVELKQYVITKSLTKPPEAYPDAKNQPHVMVALRLKQSGY TAGCSAHDTVPYVICIEQGASSGGSAGIAQRARHPDELEKDDGKWMIDIDYYLSQQIHPVVSRLCAPIQGTSPERLADCLGLDSSRFRSRSNEAADSDPS SSLVFAGNDEDRYQSCEPLTLSCPSCSSTFDCPDIFSSICKSINGTTTTEAQPEESISNFWRTLRCPKCPEEGNLGRVSPATIANQVRRQAESFVSTYYK GIMMCDDETCKHTTRSLNLRLVGESEKGTVCPNYPRCNGRLVRKEQQQMEVSKRFALEEERRKIRGVVEMAVSTVEKMRDRCAYGWVQLNDFTVTV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	0	1
AT3G57060			binding (.1.2)		Lus10039013 [exp]	1.4	0.9748
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10020845 [exp]	2.0	0.9564
AT1G04650			unknown protein		Lus10011755 [exp]	2.4	0.9586
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	3.5	0.9636
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	4.9	0.9279
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10006888 [exp]	5.9	0.9465
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10025860 [exp]	7.2	0.9271
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	11.3	0.9369
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	12.3	0.9442
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	12.8	0.9376

Compare expression of checked genes

Lus10019338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.