Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36945 457 / 2e-159 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 439 / 3e-153 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 440 / 8e-153 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 375 / 6e-127 PLC-like phosphodiesterases superfamily protein (.1) AT1G13680 342 / 3e-115 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019843 [exp] 456 / 7e-159 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 454 / 1e-157 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10012600 [exp] 363 / 4e-123 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 362 / 6e-122 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 349 / 1e-117 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 347 / 4e-117 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 331 / 1e-110 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 305 / 1e-102 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 292 / 8e-98 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045200 [exp] 530 / 0 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 529 / 0 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 489 / 7e-172 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 389 / 3e-132 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 370 / 6e-125 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 363 / 2e-123 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 359 / 2e-121 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 345 / 1e-115 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 312 / 8e-105 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019339 pacid=23141289 polypeptide=Lus10019339 locus=Lus10019339.g ID=Lus10019339.BGIv1.0 annot-version=v1.0 ATGCTAACCCCATCTCTCCCGCAATTCCCCCCCTATAAGATCTCTGCAATTTCCCTCCTTTCACAATTTCCCTCCAAAATTCCCCCAAACCCTTCTTCTC CTGAGATGAAGGGATCAAACATTGCTCCAGGGCTCAATCTCTTATCCTTCTTCATTTTCATCATTTCGTTTCATCTCTTTGTCTTCAGTTGTTCCGCCCT CAAGCTAGGAGAGACGTGTTCGTCGGACGAACAGTGCGATCCGGGGTTACGATGCCAGAATTGCGCTGCGAATGGTAACACCCGGTCTAGATGCACCCGA ATCAAGCCGTTGATGCCCATAACCAAAGTGAAAGATTTACCGTTTAACAAGTACTCGTGGCTTACTACGCACAACTCTTTTGCTATGATGGGTGCAAGCT CCATGCTGGGTTCCATTCTGCTTTCTCCTAGGAACCAAGAGGATACAGTTACCAGTCAATTGAATAATGGGATACGAGGCCTAATGCTCGACATGTACGA CTTCAACAACGCCATCTGGCTATGCCACTCCTTCGGCGGCAAATGCTACAACTACACAGCCTTTAAGCCAGCGGTGGACGTGCTGAAAGAGGTCGGATCA TTTCTGTGCAACAACCCGTCGGAGATCGTCACCATCTTCATCGAAGACTACGTGACATCGCCGCAAGGGTTGAGCAAGGTGTTCAACGAGTCTGGTCTGA CGCAATACCTTTTCCCAGTGGCGAGCATGCCCAAGCGCGGCGGCGATTGGCCTCTGGTGAACGACATGGTGAAGCAAAACCACCGGCTTCTGGTGTTCAC TTCCAAGCCTGAGAAAGAGGCTTCCGAAGGGTTTGCTTTTATGTGGAGATACGTCTTGGAAAGTCAATATGGAGACGATGGGTTGAAACCAGATTTGTGC GTGAACAGAGCAGAATCGCCGCCCTTGAATTTACCGACGATATCGTTGATTCTACAGAACCACTTCCCAACTAATCCCAACAACTCCAGAGTCTGCATGG ATAACTCAGTTCCTCTCGAAGCATCGGTGAAAACCTGTGCTAAGGCGGCTGGTAATCGGTGGCCGAACTTCATTGCCGTCGATAACTATCAGAGAAGTGA CGGCGGTGGAGCCCCAGAAGCAGTGGATGAAGCCAACGGCCACCTCACTTGTGGATGTCCCAATGTCGCCTATTGCAAGTTCAATGCCACATTTGGATCA TGTGATATCCCACAACTAGCCCCGCCTCCACCGGCATCTGGAGGCGAGCAGTCGCTTTTTGGGCAGACTCTGATCGAAAGCTCTGCTTATTCTCTGAGAA TCCAACTGCAGCAATGGCTGTTTGTGATAGTTTTGATCACCATTGTTACAGTTCTAACCTACTGA
AA sequence Show only first row Show all	>Lus10019339 pacid=23141289 polypeptide=Lus10019339 locus=Lus10019339.g ID=Lus10019339.BGIv1.0 annot-version=v1.0 MLTPSLPQFPPYKISAISLLSQFPSKIPPNPSSPEMKGSNIAPGLNLLSFFIFIISFHLFVFSCSALKLGETCSSDEQCDPGLRCQNCAANGNTRSRCTR IKPLMPITKVKDLPFNKYSWLTTHNSFAMMGASSMLGSILLSPRNQEDTVTSQLNNGIRGLMLDMYDFNNAIWLCHSFGGKCYNYTAFKPAVDVLKEVGS FLCNNPSEIVTIFIEDYVTSPQGLSKVFNESGLTQYLFPVASMPKRGGDWPLVNDMVKQNHRLLVFTSKPEKEASEGFAFMWRYVLESQYGDDGLKPDLC VNRAESPPLNLPTISLILQNHFPTNPNNSRVCMDNSVPLEASVKTCAKAAGNRWPNFIAVDNYQRSDGGGAPEAVDEANGHLTCGCPNVAYCKFNATFGS CDIPQLAPPPPASGGEQSLFGQTLIESSAYSLRIQLQQWLFVIVLITIVTVLTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	2.0	0.9616
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10021039 [exp]	2.6	0.9272
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	2.8	0.9213
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	3.2	0.9564
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	3.5	0.9361
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	4.2	0.9468
					Lus10021242 [exp]	5.0	0.9338
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028883 [exp]	5.3	0.8663
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	5.5	0.9325
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	7.9	0.9122

Compare expression of checked genes

Lus10019339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.