Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67080 304 / 4e-102 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT3G50310 301 / 6e-101 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT4G36950 286 / 4e-95 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT4G26890 175 / 7e-51 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G07150 175 / 2e-50 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT2G32510 168 / 6e-49 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT2G30040 170 / 1e-48 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT5G55090 169 / 2e-48 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT1G05100 156 / 9e-45 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT5G27510 151 / 3e-43 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009364 [exp] 353 / 8e-123 AT5G67080 168 / 1e-50 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10012668 [exp] 350 / 6e-120 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 166 / 1e-48 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10030042 [exp] 167 / 4e-48 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10034288 [exp] 163 / 9e-48 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10035284 [exp] 158 / 1e-44 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10022951 [exp] 158 / 2e-44 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10026894 [exp] 153 / 3e-44 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10021551 [exp] 158 / 7e-44 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044800 [exp] 328 / 3e-111 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 317 / 8e-107 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 310 / 2e-104 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.003G184200 [exp] 204 / 2e-62 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.001G042400 [exp] 203 / 4e-62 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.004G007700 [exp] 189 / 7e-56 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 185 / 3e-54 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.009G131100 [exp] 177 / 3e-53 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G130000 [exp] 176 / 5e-52 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.002G228200 [exp] 174 / 1e-50 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019340 pacid=23141408 polypeptide=Lus10019340 locus=Lus10019340.g ID=Lus10019340.BGIv1.0 annot-version=v1.0 ATGGACTGGATCCGAGGAGACTCCATCGGTTACGGAAGCACGTCGACGGTGAATCTCGCCTTTTCAAGAGGGTCATCATCTAATTGTTGTGGTAGCAGCT TGATCTCGCCGCCGGCGGTGATGGCGGTGAAGTCTTCCCGGAACTCCGATCTGCTCGAGAACGAGAACGAAGTACTTACCCAGATTGGAGATTGCCCGCA GATCATCCGCTGCTTCGGGATCGAAAAGGAGGACCTGTTCCTTGAGTACGCTTCAAAGGGGAGCTTAGCGGATCGGCTCCGGCAATCTCCCGCCGGGAGA TTGTCGGAGCTCGAAGTCCGGCGACACGTTGGATCGGTGTTGAAAGGATTGAATCACATCCACGGGAAGGGATTCATCCACTGCGATATTAAGCTCCAGA ATCTGCTGGTTTTCGACGATGGCGAAGTCAAGATCGCTGATTTCGGATTGGCGAAGAGAACAGAGGAAGATGATCGGAAACAGAGGAAGTTTCAAATTCG CGGGACGCCTCTATTTATGGCGCCGGAATCTGTCACTGACAACGTATACTCGCCGGCGTGTGATGTGTGGGGTCTCGGATGCGCCGTTGTGGAGATGTTA ACTGGGAAGCCGGCGAGGAAATTCGATCAGGGGATGGACGTTTTCTCGTTCTTGGTTAAGATCAGTGCCGGCGATGAATCTTTCTCGTCGCCGGCGATTC CGGAGGAATTTTCCGGGGAAGCTAAGGATTTCCTCTCCAAGTGCTTCGTTCAAGATCCGAATCGGAGATGGACGGCTGAGATGCTATTGGACCATCCGTT TGTCATCGAGGAGCAAAACTGCGTTGTTTCAGAGGAATCATCACCACGATGTCCGTTCGATTTCCCAGAGTGGGTATCGGTACAATTGGGATCGAATTCG GATTTGGATTCGTCTCCTTTCGATTCCTTGGTGTCCACAAGCGAGTGTTTGACTTCGTCGGAGGAGAGAATTCGAACGTTGGCCGGCAATCGGCCAGGGG TAGGATGGGAAGATTCAGTGAGTTGGCTGGTAGTTAGGTGA
AA sequence Show only first row Show all	>Lus10019340 pacid=23141408 polypeptide=Lus10019340 locus=Lus10019340.g ID=Lus10019340.BGIv1.0 annot-version=v1.0 MDWIRGDSIGYGSTSTVNLAFSRGSSSNCCGSSLISPPAVMAVKSSRNSDLLENENEVLTQIGDCPQIIRCFGIEKEDLFLEYASKGSLADRLRQSPAGR LSELEVRRHVGSVLKGLNHIHGKGFIHCDIKLQNLLVFDDGEVKIADFGLAKRTEEDDRKQRKFQIRGTPLFMAPESVTDNVYSPACDVWGLGCAVVEML TGKPARKFDQGMDVFSFLVKISAGDESFSSPAIPEEFSGEAKDFLSKCFVQDPNRRWTAEMLLDHPFVIEEQNCVVSEESSPRCPFDFPEWVSVQLGSNS DLDSSPFDSLVSTSECLTSSEERIRTLAGNRPGVGWEDSVSWLVVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10019340 [exp]	0	1
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10042082 [exp]	3.2	0.8024
					Lus10039878 [exp]	9.3	0.7829
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002986 [exp]	17.2	0.7341
AT5G17350			unknown protein		Lus10035268 [exp]	18.3	0.7484
AT2G15220			Plant basic secretory protein ...		Lus10001609 [exp]	18.4	0.6467
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	19.8	0.7469
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	21.7	0.7217
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	32.0	0.6909
AT5G28830			calcium-binding EF hand family...		Lus10009175 [exp]	33.6	0.7133
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	34.3	0.7293

Compare expression of checked genes

Lus10019340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.