Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36960 464 / 4e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 104 / 1e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 103 / 6e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 100 / 3e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G17640 98 / 1e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 96 / 6e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 95 / 2e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 91 / 6e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G40490 88 / 5e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 86 / 1e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009360 [exp] 597 / 0 AT4G36960 529 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 105 / 2e-25 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 103 / 3e-24 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 103 / 6e-24 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 101 / 3e-23 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 100 / 8e-23 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 99 / 2e-22 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 99 / 2e-22 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 98 / 3e-22 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044400 [exp] 520 / 0 AT4G36960 534 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G138600 [exp] 519 / 0 AT4G36960 540 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G196500 [exp] 111 / 4e-27 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G040900 [exp] 110 / 1e-26 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 106 / 3e-25 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 103 / 2e-24 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 103 / 5e-24 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 101 / 2e-23 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 100 / 8e-23 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G195300 [exp] 96 / 1e-21 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10019341 pacid=23141354 polypeptide=Lus10019341 locus=Lus10019341.g ID=Lus10019341.BGIv1.0 annot-version=v1.0 ATGGATTGTCTGGCCTCTGTTTCTAAAGAGTCTGGTAACTCTGACATTCCAACCCACTTGGCCACAACCCTTTGTACTTCTGAGCGGGCATCCGGGCGAT CTCGTGGTTTTGGGTATGTCACGTTTGCATCAGTTGAAGATGCCAAGACCGCATTAGAGAGCGAACACTACCTGGGAAACAGAATGCTGGAAGTTAAAGT GGCTACACCAAAGGAGGAGATGAGAGCACCTGGAAAGAAGGTGACAAGAATTTTTGTGGCTCGGATTCCTCCGTCTGTCACTGAAGGAACTTTCCGTAGT CATTTTGAGAAATATGGAGACATAGTAGATTTGTACATGCCAAAGGATCATAGCTCAAAAACTCATCGTGGAATTGGGTTTATCACATTTGCTAATCCAG AATCTGTGGACAGTTTGATGGTTGACACACATGAGTTGGGTGGTTCCACCATAGTTGTTGATCGAGCAACACCTAAGGAAGATGACTATAGACCAGTAGG AAGAGCTCCCTCACATGCCTCACACGTCTCCTCCCATGCCGCACCTGCCTCCCATGGCTCACACGGCGGGTATGGTGCATACAATGCGTATATTTCTGCT GCTACTAGATACGCAGCCCTCGGTGCTCCCACCTTATATGACCATCCAGGCCAACTCTATGGAAGAGCTGAGCCACCTAGGGGAACCGGGAAAAAGATAT TTGTGGGAAGGCTTCCTCAGGAGGCAACTGCTGAAGATTTACGCCATTATTTTGGTAGATTTGGCCACATAATGGATGTTTATGTCCCAAAGGACCCCAA AAGAAGCGGCCATAGAGGTTTCGGATTTGTCACCTTTGCAGAAGACGGTGTGGCAGACCGTGTTGCTCGAAGGTCTCATGAGATTTGTGGCCATCAGGTT GCTATAGATTCAGCCACGCCACTCGACGAAGCCGGTCCCAGCGAAAGTTACATGATACCTGGGGCAGCAGTAACTCTCGGCGGTTATGGTGGTCCTTTGC GCAGCTTCGGTAGGATGTATGGAAACCTGGGTTTCGAAGATATGAGTTGGGGTTATGGCATGGGTGCCGTAAGGCCCTCAAGAGCAGATTGGAGGTACAG ACCGTATTAA
AA sequence Show only first row Show all	>Lus10019341 pacid=23141354 polypeptide=Lus10019341 locus=Lus10019341.g ID=Lus10019341.BGIv1.0 annot-version=v1.0 MDCLASVSKESGNSDIPTHLATTLCTSERASGRSRGFGYVTFASVEDAKTALESEHYLGNRMLEVKVATPKEEMRAPGKKVTRIFVARIPPSVTEGTFRS HFEKYGDIVDLYMPKDHSSKTHRGIGFITFANPESVDSLMVDTHELGGSTIVVDRATPKEDDYRPVGRAPSHASHVSSHAAPASHGSHGGYGAYNAYISA ATRYAALGAPTLYDHPGQLYGRAEPPRGTGKKIFVGRLPQEATAEDLRHYFGRFGHIMDVYVPKDPKRSGHRGFGFVTFAEDGVADRVARRSHEICGHQV AIDSATPLDEAGPSESYMIPGAAVTLGGYGGPLRSFGRMYGNLGFEDMSWGYGMGAVRPSRADWRYRPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10019341 [exp]	0	1
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	1.7	0.8988
AT2G45060			Uncharacterised conserved prot...		Lus10042878 [exp]	4.7	0.8724
					Lus10041517 [exp]	7.7	0.8463
AT4G22550			Phosphatidic acid phosphatase ...		Lus10004345 [exp]	11.8	0.8480
AT1G65270			unknown protein		Lus10026847 [exp]	14.2	0.8420
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	18.7	0.7472
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	21.4	0.8307
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	24.2	0.8448
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10042049 [exp]	25.5	0.8361
AT5G44860			unknown protein		Lus10036220 [exp]	25.9	0.8227

Compare expression of checked genes

Lus10019341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.