Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67030 780 / 0 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT2G29720 95 / 2e-20 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 86 / 6e-18 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT5G05320 78 / 4e-15 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G38540 73 / 1e-13 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15760 49 / 9e-06 MO1 monooxygenase 1 (.1.2) AT5G11330 46 / 7e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009359 [exp] 1105 / 0 AT5G67030 888 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10034467 [exp] 77 / 1e-14 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10000593 [exp] 76 / 2e-14 AT2G35660 639 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Lus10033385 [exp] 73 / 2e-13 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 67 / 2e-11 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 56 / 6e-08 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 55 / 2e-07 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034816 [exp] 55 / 2e-07 AT5G05320 284 / 7e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011001 [exp] 54 / 3e-07 AT2G35660 451 / 8e-164 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044300 [exp] 856 / 0 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.005G138400 [exp] 847 / 0 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.001G229100 [exp] 422 / 1e-141 AT5G67030 477 / 9e-164 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.001G152600 [exp] 75 / 7e-14 AT2G35660 658 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Potri.019G003500 [exp] 64 / 2e-10 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 62 / 4e-10 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 62 / 4e-10 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 62 / 6e-10 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 60 / 3e-09 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 59 / 6e-09 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10019342 pacid=23141342 polypeptide=Lus10019342 locus=Lus10019342.g ID=Lus10019342.BGIv1.0 annot-version=v1.0 ATGGCGTCTTTGACTCTGTTCTCAAGCTCGATCCCACCGTCGTCAATGGCGGTTTCAGCGAGAACCCACTTCCTAATCCCACCTTTCTCAACAAACCCAT CAGTCGAATTCTCCAGTTGTTGCGATCAGCTACACTTCCAGAGCAGGAGGCGGCAGAGGAAGAAATCGAGTCTTCCATTAGCCAGAGCGGAGGCAACGGC GGCGCAATTGGAGAAGCCGGCGGCGAAGGAGGTGAAGAAGAAGCTGAGGGTTCTGGTGGCCGGCGGCGGGATTGGAGGGCTGGTGTTGGCTCTGGCGGCG AAGAAGAAGGGGTTTGATGTGACGGTGTTTGAGAGGGATCTGAGCGCTGTGAGAGGAGAAGGGCAGTACAGAGGTCCGATTCAGATACAGAGCAACGCGT TGGCTGCTTTGGAAGCCATTGATTTGGATGTTGCTGAAGAGGTTATGAGAGTTGGGTGTGTTACTGGTGACAGGATTAATGGCCTTGTTGATGGCATTTC TGGCACTTGGTATGTCAAGTTTGATACATTCACTCCTGCTGTAGAGCGCGGTCTTCCGGTTACTCGAGTCATTAGCCGGATGACTCTCCAGAGCATCCTT GCTTCCGCAGTCGGACAAGAGATTATCCACAACGACAGTAATGTCGTGGATTTTCAGGACGATGGAGATAAGGTTACTGTGACCCTGGAGAATGGGGAGC GATTCGAAGGCGATCTCTTGGTTGGTGCTGATGGGATATGGTCAAAGGTACGTAGAAAGTTGTTTGGACTGAAGGACGCGACTTACTCTGGCTACACTTG CTACACCGGCATAGCAGATTTCATCCCCGTCGATATCGAATCTGTTGGGTACCGAGTATTCTTGGGTCACAAGCAGTACTTTGTCCGGGATGAACATTTT ACATTTAACCAACTTCTCGTATTTTTTCGAATGGCAGGTATGAAGGAGAGGCTGATGGAGATATTCGGAGGATGGTGCGAAAACGTGACCGATTTGATCA ATGCAACAGATGAAGAAGCAGTTCTCAGAAGGGACATATTCGACAGAACTCCGACACTTAACTGGGGGAAAGGCCGCGTAACTTTGCTCGGGGATTCGGT CCATGCAATGCAACCGAATATGGGTCAAGGAGGGTGTATGGCTATCGAGGACGGTTTTCAACTAGCAATGGATCTTGACAAAGCATGGAGCCAAAGCATG GAATCGGGGAAGCCGGTTGATGTCGTTTCATCATTGAGGAGTTACGAGGACGCTAGAAAGTTGCGAGTTGCGATCATCCACGGAATGGCTAGGATGGCTG CAGTCATGGCTTCGACGTACAGACCTTACTTAGGTGTAGGGCTAGGACCGTTGTCGTTCTTAACCAAGTTACGAATACCACATCCTGGAAGAGTTGGTGG GAGATTCTTCGTCAGCTTGGCAATGCCCTCTATGCTAAGTTGGGTCTTAGGCGGCAACAGTTCGAAGCTGGAAGGGAGGGCAGCTTCTTGCAGGCTATCT GACCGAGCGAACGACCAATTAAGCCGATGGTTCGAAGACAACGATGCTCTAGAGCAGGCTATTAATGGAGAGTGGTTTCTTCTTTCAGATTCGTCGGAAC CTATTCATTTACCTCGAGATGAGCAGCAACCTCACGTTTTTGGGAGCATCTCGCGGGAAGTTTCCCCCGGAGTGTCTGTGGTGATATCATCCCCTCAGAT TTCGCCGCAGCATGCTAAGATCAGTTACAAGAAAGGCTCATTCTACTTGTTAGACATGAGGAGTGAACATGGAACCTTCATCACAGACAACGAAGGGAGA CGGTACAGGATACCTCCCAACTTCCCGACTCAGTTCCATCCGTCGGATACGATCGAGTTTGGTTCCGATAAGAAGACCACGTTTCGAGTTAAGGTTCTAA GGACTTCTCCCGTGGCGAAAGGGAGAGAAGAGAAGGGAGGAGTTCTTCAAGCAGTATGA
AA sequence Show only first row Show all	>Lus10019342 pacid=23141342 polypeptide=Lus10019342 locus=Lus10019342.g ID=Lus10019342.BGIv1.0 annot-version=v1.0 MASLTLFSSSIPPSSMAVSARTHFLIPPFSTNPSVEFSSCCDQLHFQSRRRQRKKSSLPLARAEATAAQLEKPAAKEVKKKLRVLVAGGGIGGLVLALAA KKKGFDVTVFERDLSAVRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRVGCVTGDRINGLVDGISGTWYVKFDTFTPAVERGLPVTRVISRMTLQSIL ASAVGQEIIHNDSNVVDFQDDGDKVTVTLENGERFEGDLLVGADGIWSKVRRKLFGLKDATYSGYTCYTGIADFIPVDIESVGYRVFLGHKQYFVRDEHF TFNQLLVFFRMAGMKERLMEIFGGWCENVTDLINATDEEAVLRRDIFDRTPTLNWGKGRVTLLGDSVHAMQPNMGQGGCMAIEDGFQLAMDLDKAWSQSM ESGKPVDVVSSLRSYEDARKLRVAIIHGMARMAAVMASTYRPYLGVGLGPLSFLTKLRIPHPGRVGGRFFVSLAMPSMLSWVLGGNSSKLEGRAASCRLS DRANDQLSRWFEDNDALEQAINGEWFLLSDSSEPIHLPRDEQQPHVFGSISREVSPGVSVVISSPQISPQHAKISYKKGSFYLLDMRSEHGTFITDNEGR RYRIPPNFPTQFHPSDTIEFGSDKKTTFRVKVLRTSPVAKGREEKGGVLQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10019342 [exp]	0	1
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10009359 [exp]	1.0	0.9585
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	1.4	0.9208
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10037216 [exp]	5.1	0.8584
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	7.3	0.9174
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	12.6	0.8909
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10002744 [exp]	14.0	0.9051
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	14.4	0.9061
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	14.7	0.8866
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	18.3	0.8963
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	19.8	0.8777

Compare expression of checked genes

Lus10019342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.