Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32250 587 / 0 Protein kinase superfamily protein (.1.2.3) AT5G13530 103 / 1e-22 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G38470 81 / 6e-16 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT3G01490 81 / 6e-16 Protein kinase superfamily protein (.1) AT4G14780 79 / 1e-15 Protein kinase superfamily protein (.1) AT5G50000 77 / 9e-15 Protein kinase superfamily protein (.1) AT2G17700 76 / 3e-14 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G58950 76 / 3e-14 Protein kinase superfamily protein (.1) AT3G22750 75 / 3e-14 Protein kinase superfamily protein (.1) AT5G03730 69 / 4e-12 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009358 [exp] 1097 / 0 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002923 [exp] 591 / 0 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001499 [exp] 576 / 0 AT4G32250 708 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039491 [exp] 104 / 6e-23 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002368 [exp] 82 / 2e-16 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 82 / 2e-16 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10024136 [exp] 81 / 1e-15 AT5G13530 2095 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10022653 [exp] 79 / 4e-15 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 79 / 5e-15 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255700 [exp] 664 / 0 AT4G32250 828 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.018G026400 [exp] 660 / 0 AT4G32250 809 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G274900 [exp] 110 / 8e-25 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.001G029600 [exp] 100 / 1e-21 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.004G179100 [exp] 94 / 4e-20 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 91 / 6e-19 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 88 / 5e-18 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 86 / 8e-18 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 80 / 2e-15 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 77 / 9e-15 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019343 pacid=23141334 polypeptide=Lus10019343 locus=Lus10019343.g ID=Lus10019343.BGIv1.0 annot-version=v1.0 ATGGAGAAGCCGATCAAACTGAGACCTACTGCTTCATTCGAGTATGAGCTATTCGACGGAGATCCTGACCACCTGAGGACGGTTGTTGCTACACCTACAC AAACTGTGCCGTGGATTAATCCATCTGAGTTGAAGTTCAAGCACAGGATTGGGCGAGGGACGTTTGGTGATGTTTGGTTAGCAACGCACCATCAGTCGGC GGACGATTTTGATGAGTACCACGAAGTGGCTGTGAAGATGCTGCACCCGCTGAAGGAGGGTCTTGGACAGAGATTCATTTGCATTGCAATGAAAATGTAC GAGGAATCAGTTGCTGATCAGATTGCTAGGTCAAAGGGTGGAAAGCTCAAACTACCTGACGTCTTGAGATACGGTATCGACTTGGCCAAAGGAATGCTAC AGCTGCACTCACTTGGTCTGCTGCTATTGAATGTGAAACCTTCGAATTTCCTTCTTGATGAGCGTGATCAGCTGGTCCTTGGTGATTTTGGCATTCCTTT CCTTCTCCTTGGGATACCTTTGTTGAATTCTGATGTGGTTTTGAGACTTGGAACTCCAAGTTACATGGCCCCGGAACAATGGGAACCGGAAGCAAGAGGT CCTCTATGCCTGGAAACCGATTCTTGGGGTTTCGGATGTAGCATACTGGAGATGCTGACTGGGACTCAACCTTGGTTTGGGAAATCATCTCATGAAATAT ATAAAGCTGTTGTACTCAAGCAACAGAAGCCATCCATTCCAAATGGCTTACCTCCCGCTGTAGAAAATGTTATTTATGGCTGCTTTGAGTACGATCCATG GAACCGACCTCTAATGGATGATATCCTAGCTGCATTTGAGAGTTCACACAATGCCGTTCAAGGCGATGAAGGATGGATTAGTCTGGACAGTAGTAAAGCA GTATCGCAGAAATCACCCGTTGATGGCTACACAAACTGGTTTCTATCGAAAGATGATCTCCAAATGAATGACACAGTCCGTTCTAGAAAACCTCCGACCC CACAAAAGGCGGAAACCGTTGCTGTCTTGAAAGGAACAGTTGTAGGTAAAGAAACTGACAAAAATGGATCTGTTCTGGTAAAGATCTCTGGGGTACATAA TCCTCTTAAGGTACAGGAGTCAACGCTGGAAAGGGTCACACTAGGTTTTGCAGCTGGAGACTGGGTTCGTCTGAAGGACGAAAACGTCAATCACTCTCGT GTCGGCATCCTGCACACCATCAAACGTAACGGACGAGTAACCGTTGGATTTGCTGGCCGGGAGATCCTCTGGATGGGAGACATATCGAAGCTTGAAGTAA TGGAACCGTACTATCAAGGCCAATTCGTACGAGTAAAGGCAGATGTTGCTCCTCCCCGGTTTGAGTGGCCTCGCAAAGGAGGAACCCTCTGGGCCACAGG AAGGATTTCCCAAGTACTCCCCAACGGATGTCTCGTAGTCAGGTTCCCAGGACGTTTTACATTCAACGACGAGTCAAAATACTTCTTAGCCGATCCGGCT CAAGTTGAACTTGTGACGTTCGATACATGCCGTGGACTTGTGGAGAAGTACCAGCATGTAGAAGATTTCCACTGGGCTATCCGACCGCTCACTATAGCTC TGGGTGCATTCACTGCTATGAAGCTCGGGATATCTGCAGGTCGCGCTGTGAGCTCCAAACTGAACAAGGCACCGAAATCGGAGGAGAATAAGGCCGGCAA TAAGACCGATTGGCTTCCACAATCCGTTGCAAGCGTGATATTCAAAGACGGGCTTGCAACCACCACCACCATCAGATGA
AA sequence Show only first row Show all	>Lus10019343 pacid=23141334 polypeptide=Lus10019343 locus=Lus10019343.g ID=Lus10019343.BGIv1.0 annot-version=v1.0 MEKPIKLRPTASFEYELFDGDPDHLRTVVATPTQTVPWINPSELKFKHRIGRGTFGDVWLATHHQSADDFDEYHEVAVKMLHPLKEGLGQRFICIAMKMY EESVADQIARSKGGKLKLPDVLRYGIDLAKGMLQLHSLGLLLLNVKPSNFLLDERDQLVLGDFGIPFLLLGIPLLNSDVVLRLGTPSYMAPEQWEPEARG PLCLETDSWGFGCSILEMLTGTQPWFGKSSHEIYKAVVLKQQKPSIPNGLPPAVENVIYGCFEYDPWNRPLMDDILAAFESSHNAVQGDEGWISLDSSKA VSQKSPVDGYTNWFLSKDDLQMNDTVRSRKPPTPQKAETVAVLKGTVVGKETDKNGSVLVKISGVHNPLKVQESTLERVTLGFAAGDWVRLKDENVNHSR VGILHTIKRNGRVTVGFAGREILWMGDISKLEVMEPYYQGQFVRVKADVAPPRFEWPRKGGTLWATGRISQVLPNGCLVVRFPGRFTFNDESKYFLADPA QVELVTFDTCRGLVEKYQHVEDFHWAIRPLTIALGAFTAMKLGISAGRAVSSKLNKAPKSEENKAGNKTDWLPQSVASVIFKDGLATTTTIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32250			Protein kinase superfamily pro...		Lus10019343 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10005218 [exp]	6.9	0.7808
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	14.5	0.7988
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	14.6	0.8316
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10039642 [exp]	16.4	0.8014
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	17.0	0.8086
AT4G32250			Protein kinase superfamily pro...		Lus10009358 [exp]	18.0	0.7106
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	18.4	0.8264
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	21.4	0.7941
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	22.0	0.8208
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	28.9	0.8168

Compare expression of checked genes

Lus10019343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.