Plant FIBer expression Database

Lus10019345 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G67020 213 / 1e-68 unknown protein
AT3G50340 188 / 6e-59 unknown protein
AT2G22790 83 / 3e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009357
[exp]
182 / 1e-59 ND 167 / 2e-51
Lus10011589
[exp]
116 / 3e-31 AT2G22790 166 / 4e-48 unknown protein
Lus10011575
[exp]
95 / 2e-23 AT2G22790 160 / 8e-46 unknown protein
Lus10019249
[exp]
94 / 3e-23 AT5G67020 141 / 2e-38 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G044200
[exp]
226 / 1e-73 AT5G67020 537 / 0.0 unknown protein
Potri.005G138300
[exp]
223 / 2e-72 AT5G67020 520 / 0.0 unknown protein
Potri.007G008900
[exp]
116 / 1e-31 AT2G22790 153 / 2e-43 unknown protein
PFAM info
Representative CDS sequence
>Lus10019345 pacid=23141293 polypeptide=Lus10019345 locus=Lus10019345.g ID=Lus10019345.BGIv1.0 annot-version=v1.0
ATGGTCGACGTCGACAGGCGAATGACTGGCCTGAACCCAGCCCACATAGCCGGCCTCCGCCGTCTCTCCGCTCGAGCCGCCGCTTCCGCCACCCCTACCA
CCTCATCCCGCAACAGCCTCATCTCTTTCTCCCCACTAGCCAACAAAGTCATCACCCACCTCCAATCCTCCTCCGTCAAAGTCCACCCAGGCCTATCCGA
CCCGGAGTTCGCCCGAATCGAGGCCCAATTCGGATTCTCCTTCCCTCCCGACCTCCGCGCCGTACTCTCCGCTGGCCTCCCCGTCGGCCCGGGATTCCCA
AACTGGCGCTCCCCGCACTCCCACCACCTCCGATCAGCCTTAGATCTCCCCATCGCTGCCGTGTCGATCCAAATCGCGCGCAACAATCTCTGGTCCAAGA
GCTGGGGTGGCGGTGGTCCCAGGCCGTTGGATCCGGAAAAAGCGCTCAAGGTCGCGAGAAACGCGCTCAAGCGGGCCCCACTCTTGATCCCGATTTTCCA
CCATTGTTAG
AA sequence
>Lus10019345 pacid=23141293 polypeptide=Lus10019345 locus=Lus10019345.g ID=Lus10019345.BGIv1.0 annot-version=v1.0
MVDVDRRMTGLNPAHIAGLRRLSARAAASATPTTSSRNSLISFSPLANKVITHLQSSSVKVHPGLSDPEFARIEAQFGFSFPPDLRAVLSAGLPVGPGFP
NWRSPHSHHLRSALDLPIAAVSIQIARNNLWSKSWGGGGPRPLDPEKALKVARNALKRAPLLIPIFHHC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G67020 unknown protein Lus10019345
[exp]
0 1
AT5G03080 Phosphatidic acid phosphatase ... Lus10026489
[exp]
1.4 0.9349
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Lus10038356
[exp]
4.0 0.9147
AT1G67330 Protein of unknown function (D... Lus10011360
[exp]
4.9 0.9086
AT3G63000 NPL41 NPL4-like protein 1 (.1) Lus10021567
[exp]
4.9 0.9198
AT5G44060 unknown protein Lus10003619
[exp]
6.2 0.8974
AT1G75390 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) Lus10040428
[exp]
8.7 0.9171
AT1G01360 PYL9, RCAR1 PYRABACTIN RESISTANCE 1-LIKE 9... Lus10009812
[exp]
10.5 0.8955
AT1G65720 unknown protein Lus10031363
[exp]
11.0 0.9092
AT5G67020 unknown protein Lus10019344
[exp]
11.2 0.9158
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10022680
[exp]
14.5 0.9249

Lus10019345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.