Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36980 222 / 8e-67 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009350 [exp] 256 / 9e-79 AT4G36980 358 / 2e-117 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044100 [exp] 200 / 5e-58 AT4G36980 489 / 3e-169 unknown protein Potri.005G138200 [exp] 194 / 8e-56 AT4G36980 491 / 7e-170 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09750 [flax] [poplar] DRY_EERY Alternative splicing regulator
Representative CDS sequence Show only first row Show all	>Lus10019346 pacid=23141400 polypeptide=Lus10019346 locus=Lus10019346.g ID=Lus10019346.BGIv1.0 annot-version=v1.0 ATGTTTACTTGGCGAAGAGAAGAGGCGATCCGCAGCAATCGATTCAGGTCCTCAGTAATCGCTGATGGGCTATACCAAGCCAGTGAAGATCAGCAGGGAT TGATACCTTGGAATGGGAAGGAGGACGTGCTCATCGACAGATTCGACGGGCGGGCGCTGCTAGATTTCATTCGGGAGGCTGGCTCTCAGAACTTCCGCTT CGGCGTAGAGGATGTCGTGAATGATGAAGAGGGTTTGCGTCATGTGATGCTAGAGATGGAAGCCAAGGCTATTGCTCCATTTATCGCCAACAGCTGCATT TTCTTAGTTGGGGACCATGGTATCTTACACCTTGTTTCTTTCCTCAACTTTAGTAAGTCCCAGCAGTCACAGTCTCCTGCTATTAAGGGTACATATTCTC AAGTGGGTTTCTCTTACGATGACCATGGAAAAGCAGAGGACAAGGTATCAGATGATGATGAAGATGATGACGAAGATGATGATGTCGATGAAGATGATGA CTTTAACAGTGATGACAGCAACGATGAAAGGGTGGATGTGATTGCAAAAGACTTTGGAGTGAAACGGTATGGGTGGCTTGTGTATATGGATAAAAAGGCA AAAGAAGAGGAGAAGAGGCAAAAGGAAGTAATCAAAGGAGATCCTGCAATAAGGAACTTGAGTCGCAAGGAAAGACGGAAAGCTTCTCAAATAGAAAGAG AAAAAAAGAGGGAAGCTGCTAGGATCACTGGGACCAGAGAAAAACAGATGCTTGCACAAGTTGTAGTGATGCTTCTTTTCCATCTATGTAGAGAGTCTAG AAGAAGCCCAACCTATGAAGACTATTCTCGCTCTAGAAGGCCATCATCCGGTGTTATACTCGAGGCACTTCATGTCGATCCAGCATCTGGTCTATCTCTT GACAAGGATAAACCTGCCAAAGAGTTGAAACCTTCAGGAAGCAGTTCTTCAGGTTTGTCAAAGCTAGGCAAGGCAAGTGCTTCTGGGGGAATAATAAAGC AGCAGCAAAAGGAGAAGAAGGAAACTCCTCAGGAAAGACTTAAAAGGATTATGAACACGCCGTTAAATAAACAGATTAAGAAGGACACTGTTGCCGCAAC GGCTAAGAAAAGAGAACAAGAGCGGTTAAGGCTAGAAAAGTTAGCAGAAACCAGCCGAATTAGCCAAGCAAATTTAGCCGTTATAGGCGGCATAGTCGTA GCAGGAGCTACAGCCTTTCCCCACCACCGAGGCGCCGAAGCAGCAGGAGTCGGAGTCGGAGTAGGAGTTCTCGCAGGCGTCATTCCCGATCCCGATCACT GGCACGGTCACGATCTCGTACCCCGTCGCGCTCGATGTCCAATTCCCGCTCACCTAGGTGATAAATGA
AA sequence Show only first row Show all	>Lus10019346 pacid=23141400 polypeptide=Lus10019346 locus=Lus10019346.g ID=Lus10019346.BGIv1.0 annot-version=v1.0 MFTWRREEAIRSNRFRSSVIADGLYQASEDQQGLIPWNGKEDVLIDRFDGRALLDFIREAGSQNFRFGVEDVVNDEEGLRHVMLEMEAKAIAPFIANSCI FLVGDHGILHLVSFLNFSKSQQSQSPAIKGTYSQVGFSYDDHGKAEDKVSDDDEDDDEDDDVDEDDDFNSDDSNDERVDVIAKDFGVKRYGWLVYMDKKA KEEEKRQKEVIKGDPAIRNLSRKERRKASQIEREKKREAARITGTREKQMLAQVVVMLLFHLCRESRRSPTYEDYSRSRRPSSGVILEALHVDPASGLSL DKDKPAKELKPSGSSSSGLSKLGKASASGGIIKQQQKEKKETPQERLKRIMNTPLNKQIKKDTVAATAKKREQERLRLEKLAETSRISQANLAVIGGIVV AGATAFPHHRGAEAAGVGVGVGVLAGVIPDPDHWHGHDLVPRRARCPIPAHLGDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36980			unknown protein		Lus10019346 [exp]	0	1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	1.0	0.8868
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	2.0	0.8658
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10001338 [exp]	2.8	0.8302
AT1G80940			unknown protein		Lus10041624 [exp]	3.5	0.8502
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	3.5	0.7967
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	3.7	0.8087
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	4.7	0.7969
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	6.6	0.7577
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	7.7	0.7973
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	7.7	0.7854

Compare expression of checked genes

Lus10019346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.