Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36990 214 / 1e-68 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT5G62020 175 / 3e-53 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT1G46264 168 / 4e-50 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G11660 168 / 7e-50 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT2G41690 152 / 5e-45 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT4G17750 154 / 1e-43 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 144 / 1e-40 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G02990 145 / 2e-40 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G16820 145 / 2e-40 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT1G32330 144 / 7e-40 HSF ATHSFA1D heat shock transcription factor A1D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009351 [exp] 381 / 2e-134 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10008007 [exp] 197 / 4e-61 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 181 / 2e-54 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10001133 [exp] 172 / 5e-51 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10042646 [exp] 172 / 5e-51 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10030956 [exp] 158 / 3e-45 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10014994 [exp] 154 / 6e-45 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10011065 [exp] 155 / 4e-44 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10040091 [exp] 154 / 2e-43 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G043800 [exp] 261 / 3e-87 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.001G108100 [exp] 189 / 5e-58 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.002G124800 [exp] 169 / 3e-50 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G027100 [exp] 169 / 4e-50 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 161 / 2e-48 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G273700 [exp] 159 / 2e-47 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.012G138900 [exp] 159 / 6e-47 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.016G056500 [exp] 156 / 8e-47 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.015G141100 [exp] 154 / 3e-45 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.003G095000 [exp] 155 / 6e-44 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10019348 pacid=23141422 polypeptide=Lus10019348 locus=Lus10019348.g ID=Lus10019348.BGIv1.0 annot-version=v1.0 ATGGCGCAGAGGTCGGTGCCGGCGCCGTTCCTGACGAAGACGTACCAGCTGGTGGACGATCCGGCCACCGACGAGGTGATCTCGTGGAGCGAGACCGGAT CGACGTTCGTGGTCTGGAAGACGGCCGATTTCGCCAAGGATTTGCTTCCGGCTTACTTTAAGCACAACAATTTCTCCAGCTTCGTCCGCCAGCTCAACAC TTACGGATTCCGGAAGATCGTACCGGACAAATGGGAATTCGCCAACGACAACTTCCAGCAAGGAAAGAAGGAGCTCCTCTCTCAGATCCGCCGCCGCAAA TCGGTGACTGCAACTCCGCCTCAAGCTCAGGCCGCCGAAAACGGCAACAGCAACAACGACAACGGCGACGATCAAAACAACAACAACAATGCTAACAACA ACTCCTCAACCCAATCCGGCGACGACATGGGATCCAGCTCGACCTCGTCCCCGGATTCAAAGAACCCGGGGTCGACGACAACGACCACGGCGCAGTTCGC CGACGAGAACGAGAAGCTGAGGAAGGACAACGAGTCGCTGAGCTCGGAGCTGGCGCAGGCCAAGAAGCAGTGCGACGAGCTGATCTCCTTCCTCACCGAC TACGTCAAGGTCCGGCCGGAGCAGATCGACCGCATCATGAGGAGGAGCAGCAATGGTGATGACAACGATGATGACGAAAATGATGATGAATCGGACGGCG GAGAGGGTGTGAAACTGTTCGGAGTGGTGCTGAAATGCAACGGGAAGAAGAGGGGCCGCGCCGGCGATGAGGATGGGTTTGGTGTGGGGCCCGGAGCTAA GGAGATCAAGATCTGTTACTGA
AA sequence Show only first row Show all	>Lus10019348 pacid=23141422 polypeptide=Lus10019348 locus=Lus10019348.g ID=Lus10019348.BGIv1.0 annot-version=v1.0 MAQRSVPAPFLTKTYQLVDDPATDEVISWSETGSTFVVWKTADFAKDLLPAYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANDNFQQGKKELLSQIRRRK SVTATPPQAQAAENGNSNNDNGDDQNNNNNANNNSSTQSGDDMGSSSTSSPDSKNPGSTTTTTAQFADENEKLRKDNESLSSELAQAKKQCDELISFLTD YVKVRPEQIDRIMRRSSNGDDNDDDENDDESDGGEGVKLFGVVLKCNGKKRGRAGDEDGFGVGPGAKEIKICY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10019348 [exp]	0	1
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	1.0	0.9870
AT4G02920			unknown protein		Lus10008160 [exp]	7.1	0.9776
AT1G74360			Leucine-rich repeat protein ki...		Lus10003477 [exp]	8.5	0.9653
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	8.5	0.9750
AT2G15760			Protein of unknown function (D...		Lus10014025 [exp]	10.4	0.9701
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	11.7	0.9625
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	12.1	0.9718
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10019686 [exp]	12.3	0.9540
					Lus10000858 [exp]	12.8	0.9734
AT1G25370			Protein of unknown function (D...		Lus10038942 [exp]	13.5	0.9403

Compare expression of checked genes

Lus10019348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.