Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50360 277 / 1e-91 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT4G37000 280 / 1e-90 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) AT4G37010 226 / 4e-72 CEN2 centrin 2 (.1.2) AT5G37780 139 / 7e-39 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 139 / 7e-39 ACAM-4, CAM4 calmodulin 4 (.1.2) AT2G41110 137 / 4e-38 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 137 / 4e-38 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 137 / 4e-38 ACAM-3, CAM3 calmodulin 3 (.1) AT3G43810 136 / 6e-38 CAM7 calmodulin 7 (.1) AT5G21274 135 / 2e-37 ACAM-6, CAM6 calmodulin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009352 [exp] 507 / 9e-180 AT4G37000 284 / 6e-95 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10009353 [exp] 298 / 2e-98 AT3G50360 248 / 5e-84 CENTRIN 1, centrin2 (.1) Lus10039391 [exp] 138 / 2e-38 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 136 / 7e-38 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 136 / 7e-38 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 136 / 7e-38 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 136 / 7e-38 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 120 / 1e-31 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10001775 [exp] 116 / 2e-30 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G043600 [exp] 359 / 2e-121 AT4G37000 292 / 5e-98 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Potri.005G138000 [exp] 284 / 2e-94 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.007G043700 [exp] 244 / 7e-77 AT4G37000 206 / 3e-64 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Potri.007G043500 [exp] 218 / 6e-68 AT4G37000 178 / 1e-54 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Potri.012G041000 [exp] 140 / 3e-39 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 138 / 8e-39 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.016G024700 [exp] 136 / 6e-38 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 136 / 6e-38 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 136 / 6e-38 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 137 / 1e-37 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand CL0220 [flax] [poplar] PF06405 [flax] [poplar] RCC_reductase Red chlorophyll catabolite reductase (RCC reductase)
Representative CDS sequence Show only first row Show all	>Lus10019349 pacid=23141385 polypeptide=Lus10019349 locus=Lus10019349.g ID=Lus10019349.BGIv1.0 annot-version=v1.0 ATGGCTGTCAGCCTCACCTCATCTTCAGTGTTCTTCTTTCCTCCTAAATCTCTTCCATTCCCCTCCTCTTCTTCCCCTTCGTTCAAGCTTCCTCCGACCA CCAAACCAACCGTAATTGCTCTCTCTTCTCTCTCGTCCCAAATGTCCTCCGACGAAGAACCCCACTACAAATTCATGGAGTTCCCCTTTGTCTCCCAGCC TCACAGAGACGCCATGGTCGATCTCGTCTCCACCGTCGAGGATCGCCTCGGATCGGACCACCTCCTCCCTTCGGCTCTCCCTCCCGACGTCCAGTACTGC CGCAACGACTCCGGCGGAGCCCACGCCTCCCTCCACATCCGCCCCGGCCGCGATTCCTCTCCGGTGGATTTCATATTAGGAAGCTGGCTTCACTGCAAGC TACCAACAGGTTCATCCCTCAACATAACAAGCCTCTCAGCCTACCTAAACGCATCAACAGACGCCCCAAACTTCCTCCTCGAGCTAATCCAAACCACTCC GAAATCCCTAATCTTCATCCTCGACTTACCCCCTCGAAAAGACCCCGTGTCCAATCCCTCTTACCTCCACGAATTCTACGAATCCACCAAGCTCGACTCC CACAGGGAAATGCTGCACAGCCTCCCCGAGGTGAAGCCTTACTTCTCATCCTCGCTCTACCTACGGAGCGTCCTCTCCCCCACCGCGATCATCGTCAGGA TCGAGGCGGAGGATGCTGGCCGGATCGAGGAGATCTTGGTTGGAAGTGTGCATAAGGTGGCTAACGAAGTTGTGGGGTTGTGGTTGGAGAAGTGTGTGTT TAGGGAGGAGAAGGAGATGGTGGAGGAGGAAGTTGAGTGGTTGAAGAAGAGGGATGGTTTGGTTAAGGGGAAGACGATCGAGATAGATCTCGGTTCGAAT TTTCCGAGGCTGTTTGGTGATGAGGTTGCTCAGAGGTTGTTGAGTGCTGTGAGAATGTATTATAAGATTCCCACTTCTCACCGGAGTTTAGGTTCCTCCG TCGTCGTCAGCTCCATAACCATGTCGACTTCTTATAGAGGAGTATCTAGGAAGGATAATAAACCCCGATCTCGCCATCACGGTGGGTTAACCCAGCAGAA GAAGCAGGAGATCAAGGAGGCATTCGATCTCTTCGACACCGATGGCTCCGGTACTATTGATGCTAAGGAGCTTAATGTCGCCATGAGGGCTCTCGGTTTC GAAATGACCGAAGAGCAAATCACTCAAATGATTGCTGACGTGGACAAGGACGGGAGTGGGGCGATCGACTTCGACGAGTTCGTGCATATGATGACTGCGA AAATCGGAGAAAGGGATACCAAGGAAGAGCTCATGAAAGCATTCCGGATTATCGACAACGATAAAAACGGGAAGATATCCATGGATGACATCAAGCGAAT AGCAAAGGAGCTCGGCGAGAACTTCACTGACAGAGAGATCCAAGAGATGGTTGATGAAGCTGATCGTGATCACGACGGAGAAGTGAATGTCGAAGAATTC CTGAGGATGATGAGAAGAACTTCGTACCACTACTAA
AA sequence Show only first row Show all	>Lus10019349 pacid=23141385 polypeptide=Lus10019349 locus=Lus10019349.g ID=Lus10019349.BGIv1.0 annot-version=v1.0 MAVSLTSSSVFFFPPKSLPFPSSSSPSFKLPPTTKPTVIALSSLSSQMSSDEEPHYKFMEFPFVSQPHRDAMVDLVSTVEDRLGSDHLLPSALPPDVQYC RNDSGGAHASLHIRPGRDSSPVDFILGSWLHCKLPTGSSLNITSLSAYLNASTDAPNFLLELIQTTPKSLIFILDLPPRKDPVSNPSYLHEFYESTKLDS HREMLHSLPEVKPYFSSSLYLRSVLSPTAIIVRIEAEDAGRIEEILVGSVHKVANEVVGLWLEKCVFREEKEMVEEEVEWLKKRDGLVKGKTIEIDLGSN FPRLFGDEVAQRLLSAVRMYYKIPTSHRSLGSSVVVSSITMSTSYRGVSRKDNKPRSRHHGGLTQQKKQEIKEAFDLFDTDGSGTIDAKELNVAMRALGF EMTEEQITQMIADVDKDGSGAIDFDEFVHMMTAKIGERDTKEELMKAFRIIDNDKNGKISMDDIKRIAKELGENFTDREIQEMVDEADRDHDGEVNVEEF LRMMRRTSYHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10019349 [exp]	0	1
AT1G56423			unknown protein		Lus10020695 [exp]	2.2	0.8764
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10014815 [exp]	5.5	0.8287
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10016132 [exp]	6.3	0.8378
AT5G57860			Ubiquitin-like superfamily pro...		Lus10035816 [exp]	7.5	0.8319
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10017945 [exp]	8.4	0.8083
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10020302 [exp]	8.5	0.8191
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	9.5	0.8168
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	10.2	0.8095
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	10.5	0.8290
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	11.0	0.8254

Compare expression of checked genes

Lus10019349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.