Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23330 203 / 5e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 191 / 7e-55 MEF22 mitochondrial editing factor 22 (.1) AT3G26782 189 / 2e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33760 187 / 8e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 186 / 3e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31070 184 / 1e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40410 184 / 1e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06140 183 / 1e-52 MEF3 mitochondrial editing factor 3, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16610 182 / 6e-52 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G57430 184 / 2e-51 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018492 [exp] 202 / 2e-59 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 199 / 7e-57 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 194 / 3e-56 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039703 [exp] 194 / 3e-56 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023710 [exp] 192 / 1e-55 AT4G18750 385 / 3e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035619 [exp] 194 / 3e-55 AT4G35130 794 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 194 / 5e-55 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 193 / 8e-55 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028593 [exp] 191 / 1e-54 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G137900 [exp] 310 / 2e-97 AT3G09040 421 / 3e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G014800 [exp] 202 / 2e-59 AT5G40410 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 200 / 7e-58 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 200 / 1e-57 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 195 / 1e-56 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G186500 [exp] 194 / 2e-56 AT3G23330 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 197 / 3e-56 AT3G22690 582 / 0.0 unknown protein Potri.003G006800 [exp] 196 / 5e-56 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 194 / 3e-55 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 194 / 7e-55 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019350 pacid=23141360 polypeptide=Lus10019350 locus=Lus10019350.g ID=Lus10019350.BGIv1.0 annot-version=v1.0 ATGTTGGAAGAGGATGATCACAGGCCAAATTCGGTGACTTTGTTGAGTTTGCTACCTGTGTGTTCTTCTTTCTTGCAGGTTAAGGAAGTTCATGGTTATG GAGTCAGGAGAGGTAAAGGAAGTGCAACTTCTCTTCTTATTTCGTGTCTAATCTCTGCGTATGCACGATTCGATCGGATCGAAACATGCTTATCGTTGTT CGAAACGAGAAAGTACAACAATTTATCGATATGGAATTCGATCATTTCTGCTCATGTCGAAACCAGAAACGCAGAGAAAGCAGTTGAATTTTTTCACTGG TTGGTTGAGTCCGGGTTACAACCTGATCGGGTTACGGTTCTGAGTTTGATATCGGCATCTTCTCGGTTAAACAGCTCGAATCTCGTCGATTCGTTGCTCG CCTATACGGTCCGGAAAGGATTCGGACGAGATACAGCAATCAACAATGCCCTGATCGATTCATACTCAAGAACCGGAACCAACATCTCGAAAGCTCGAAT GGTATTCGACCAGCTCGAAGAGAATGCAAATGTCGCCCCGTGGAACACGATGATCAACGGCTACGGCCTTCATGGCGACGGAGAATCGGCCCTCGAGCTG TTCTCGAGGGTCACAAGACCGGATCACGCGACATTCTCGGCCGTTCTGTCGGCTTGCAGCCATTCCGGTTTGGTTCAACAAGGGTGGGCGGTTTTCGAGT CTATGTCGAGATTTGGGGTTCACCCGAGAATCGAGCAATATGGCTGTTTGGTGGATATGTTAGGGAGAAGTGGTTACTTGGTTGAAGCTTATGAAGTGGT CAAGAAGCTTCTGATACGGTCGTGTCAGGATTCATCGAGAATCGAGTTAATTCTCGAGTCTTTGCTGGGTGCCTGCAGGGTTTATGGCAATGTGGAGGTT GCAGAGGAAGTTCGGAGGTCGTTGGTGTGTCGAAATTCGGGATCATATGTGATGCTTTCGAATGTGTATGCAGATGCTGGAAGATGGGGGGATGCTGATG GAGTTAGATTGAGTGTGGATAGGAGGAAGTTGTGGAAAGCTCCTGGTTGCAGCTTACTTGTAGGACAAGAACAACAGAAGTACCGAAGAGAGGGCAATGA GTTGGTTGAGTAA
AA sequence Show only first row Show all	>Lus10019350 pacid=23141360 polypeptide=Lus10019350 locus=Lus10019350.g ID=Lus10019350.BGIv1.0 annot-version=v1.0 MLEEDDHRPNSVTLLSLLPVCSSFLQVKEVHGYGVRRGKGSATSLLISCLISAYARFDRIETCLSLFETRKYNNLSIWNSIISAHVETRNAEKAVEFFHW LVESGLQPDRVTVLSLISASSRLNSSNLVDSLLAYTVRKGFGRDTAINNALIDSYSRTGTNISKARMVFDQLEENANVAPWNTMINGYGLHGDGESALEL FSRVTRPDHATFSAVLSACSHSGLVQQGWAVFESMSRFGVHPRIEQYGCLVDMLGRSGYLVEAYEVVKKLLIRSCQDSSRIELILESLLGACRVYGNVEV AEEVRRSLVCRNSGSYVMLSNVYADAGRWGDADGVRLSVDRRKLWKAPGCSLLVGQEQQKYRREGNELVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10019350 [exp]	0	1
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	2.6	0.8008
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	2.8	0.7643
AT4G34770			SAUR-like auxin-responsive pro...		Lus10042376 [exp]	5.9	0.7508
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10012098 [exp]	6.9	0.7714
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	8.5	0.7761
					Lus10026124 [exp]	9.8	0.7516
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10014161 [exp]	14.4	0.6544
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	16.9	0.7563
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	25.5	0.7505
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	27.2	0.6915

Compare expression of checked genes

Lus10019350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.