Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66800 73 / 1e-16 unknown protein AT4G34419 66 / 2e-14 unknown protein AT3G50640 54 / 2e-09 unknown protein AT3G19200 46 / 6e-07 unknown protein AT5G19340 45 / 7e-06 unknown protein AT3G05980 43 / 2e-05 unknown protein AT1G67050 40 / 0.0002 unknown protein AT5G38320 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009349 [exp] 207 / 2e-69 AT5G66800 113 / 5e-32 unknown protein Lus10019867 [exp] 61 / 1e-12 AT3G19200 89 / 3e-23 unknown protein Lus10014046 [exp] 61 / 8e-12 AT3G19200 89 / 8e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042600 [exp] 123 / 2e-36 AT5G66800 121 / 4e-35 unknown protein Potri.004G141600 [exp] 88 / 1e-22 AT4G34419 95 / 2e-25 unknown protein Potri.009G102800 [exp] 77 / 2e-18 AT4G34419 95 / 2e-25 unknown protein Potri.010G090700 [exp] 39 / 0.0006 AT3G05980 141 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019352 pacid=23141406 polypeptide=Lus10019352 locus=Lus10019352.g ID=Lus10019352.BGIv1.0 annot-version=v1.0 ATGGCATGCTTAGACATGTACAGCTCCGATCAGCAGCAGCACAAAGGCAGCCACCACCACCACCACCCTCCACCCATGAGCCCCAGAATCTCCTTCTCTA ATGACTTTGCTGATTCCCACCACCAGATGATGATGATGAAGCAAGAACGAAGCAGCAGCTCCTCTTCATCGTCAAAGCAGCATCCGCCAGCTTCGTCATC AGACTTCGAATTCTCAGTTACAGGCTACTCCATGATGAGTGCTGATGAGCTCTTCTCCAAAGGCAGGATCTTGCCGTTCAAGGACACCAGCAGCAGCCAA ATGCAGAGGACTACTACTATAAGGGAGGAGCTTCTCGTTGATGAAGACAGTGAAGTTTCGCTGAGGCCGCCGAGAGGCTCGGCGGGGAGTTGGGAGGTGG AAAGGGTTTCTGGGATTGAGGAGGAGCCACATTGGGTCGAAGAAAGTTGA
AA sequence Show only first row Show all	>Lus10019352 pacid=23141406 polypeptide=Lus10019352 locus=Lus10019352.g ID=Lus10019352.BGIv1.0 annot-version=v1.0 MACLDMYSSDQQQHKGSHHHHHPPPMSPRISFSNDFADSHHQMMMMKQERSSSSSSSSKQHPPASSSDFEFSVTGYSMMSADELFSKGRILPFKDTSSSQ MQRTTTIREELLVDEDSEVSLRPPRGSAGSWEVERVSGIEEEPHWVEES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66800			unknown protein		Lus10019352 [exp]	0	1
AT5G66800			unknown protein		Lus10009349 [exp]	1.0	0.9362
AT5G03670			unknown protein		Lus10035565 [exp]	11.1	0.8629
AT5G50930			Histone superfamily protein (....		Lus10022425 [exp]	13.6	0.8283
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	15.9	0.8278
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	16.4	0.8591
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	23.1	0.8258
AT4G16807			unknown protein		Lus10010996 [exp]	24.5	0.8346
AT5G49170			unknown protein		Lus10022872 [exp]	25.6	0.8204
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	26.2	0.8386
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	27.2	0.7962

Compare expression of checked genes

Lus10019352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.