Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031022 [exp] 275 / 4e-91 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 274 / 2e-90 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 136 / 3e-37 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 134 / 6e-36 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 133 / 6e-36 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 133 / 3e-35 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 125 / 1e-33 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 121 / 1e-31 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 114 / 3e-29 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G137600 [exp] 269 / 5e-88 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 267 / 2e-87 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 166 / 1e-48 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 160 / 2e-46 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 142 / 2e-39 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 139 / 3e-38 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05266 [flax] [poplar] DUF724 Protein of unknown function (DUF724)
Representative CDS sequence Show only first row Show all	>Lus10019353 pacid=23141401 polypeptide=Lus10019353 locus=Lus10019353.g ID=Lus10019353.BGIv1.0 annot-version=v1.0 ATGGAAATTGTATCCAGCAAGAGCTCAAAGAAAAAACGTTGCAAACCTCGATCATCTTTGGTCGGGAAGAAAAAGAGGAAGACTAGCAAGCCAAGATCAT CGTTTCGTTTCACTGGACAACCAGCAGAGCAATCTGGAAATGATAGCGAAGAGGTTGGTTCTGAAGTTTTAGAAGGTGGCAACTTATCCTTTCATGCGCT CCAGTTTAAAGACATCAAGAGCTTTGAGGACTTCAGCATTGTGATCGAGGGATCTGTCTTAGATTCTGGACTAACTGAAGAAGTTCGGAGAAAGTACTAC AAGCTCTGCCGTGGTCAAAATGCTTTTCTTCATGACAACGTCCTGAAGGGCCTCAACTCAAAGCTGACTGCCGGCATTATTTCTGAAACCGTGAACATTG CTGATGCCATGAAGGAGTGCACTCTTTCAACCTCACGGGACGAGTTTACTAACTGGGATAAGACATTGAAAGCTTCTGAGATTTTTGGCCTGAATGTTGG GTTTCTACGTGCTAGGCTAGAACACCTTGTCAACCTTGCCTTCAATTCTGAAGATGCGACAAGAGCCAAAAGGTACATGGAAGCTAGAGCCGAGAGACTC CACACTGAAGTCGAGATACGAAATCTAGAAGCGAAGCTTGCAGAAACGAAAGCAGCCTGTGGAAGGTATGAATCTGATGGAGGGACTATGATAACAAAAG CTGAAAGCTATGAGCTCAAGTTTCATAGGGCAGTCCTTGCTCCATGGTAA
AA sequence Show only first row Show all	>Lus10019353 pacid=23141401 polypeptide=Lus10019353 locus=Lus10019353.g ID=Lus10019353.BGIv1.0 annot-version=v1.0 MEIVSSKSSKKKRCKPRSSLVGKKKRKTSKPRSSFRFTGQPAEQSGNDSEEVGSEVLEGGNLSFHALQFKDIKSFEDFSIVIEGSVLDSGLTEEVRRKYY KLCRGQNAFLHDNVLKGLNSKLTAGIISETVNIADAMKECTLSTSRDEFTNWDKTLKASEIFGLNVGFLRARLEHLVNLAFNSEDATRAKRYMEARAERL HTEVEIRNLEAKLAETKAACGRYESDGGTMITKAESYELKFHRAVLAPW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019353 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001922 [exp]	1.4	0.9127
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	2.8	0.9086
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	5.1	0.8762
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	5.9	0.8970
AT2G02570			nucleic acid binding;RNA bindi...		Lus10024458 [exp]	11.0	0.8735
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	11.4	0.8835
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	12.5	0.9009
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	12.6	0.8583
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	16.7	0.8866
AT1G30140			unknown protein		Lus10024751 [exp]	17.1	0.9012

Compare expression of checked genes

Lus10019353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.