Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14640 275 / 9e-86 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14630 272 / 8e-85 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14610 271 / 2e-84 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14680 267 / 4e-83 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14620 258 / 3e-79 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14690 256 / 1e-78 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14660 255 / 2e-78 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14650 251 / 7e-77 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT2G26710 250 / 2e-76 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT2G46960 233 / 4e-71 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005788 [exp] 660 / 0 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10019175 [exp] 417 / 8e-142 AT3G14620 318 / 1e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036818 [exp] 412 / 3e-139 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 411 / 8e-139 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036816 [exp] 407 / 4e-137 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10019184 [exp] 400 / 3e-134 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10036817 [exp] 414 / 2e-133 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019176 [exp] 398 / 2e-133 AT3G14620 342 / 8e-112 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10017775 [exp] 397 / 9e-132 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 404 / 8e-136 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 387 / 2e-129 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 376 / 4e-125 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 372 / 9e-124 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 369 / 4e-122 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 363 / 4e-120 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 295 / 1e-94 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G098800 [exp] 273 / 5e-85 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 267 / 9e-83 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 266 / 2e-82 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain CL0405 [flax] [poplar] PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019354 pacid=23141348 polypeptide=Lus10019354 locus=Lus10019354.g ID=Lus10019354.BGIv1.0 annot-version=v1.0 ATGGTTAAGCAAGCTCTATTTGACAAAAATGGTAACTTCCCAAAAGCTCAATGGGGTTTTGCTTATGCTCGCAAGATTATGGGCACTGGGATTGTGACTA ATGATGGTGAGAAATGGTCCAAGATCAGGAAGCTTGCTAATCTCTCTTTCCATGGAGTCAAGCTCAAAAGTATGGTGCCTGAGATGATCGATGCAACAGA AAACATGTTGAGGAGATGGAAGGACAAGGAGGAAGTACATGAAGAGATTGAAGTTTATGAAGAGTTCAGGATGTTGACAGGCGAAATGATTTCGAGGACT GCTTTCGGAACTAGTTTCGACGAAGGAAGACAGATCTGTGACATGATTGTCAAGATGAAATTGTTAATTGATAAGAACGTCTTCAAGTTCAGACTTCCAA TCGTCAGCAAGATTTTCAAGAGTCGTGATTACAGGGAAGTTGGCAGGCTCGAAAGGAGGATTCGAGCCTGCATTTTGGAAATTGTGAGCAAGAGAGAAGA AGATCATGGTGTGGTGAAAGACGATTATCTCGGCCTGCTTATACAAGCTCACCATGAACGAGAGGAATCGAGTAAAATTTCGATTGACGATCTCGTTGAT GAGTTCAAAACGTTGTACTTAGCAGGGCATCACACGACGAATGCCCTGATTTCTTGGATTGTCCTGCTTCTGGCAATCCACCAGAATTGGCAACAGGAGG CCAGAAATGAAGTTTTCAGTGTCTTTGGTCGTGACGAATCTCCTGATGTTGATGGGATCTCGAAGCTCGAAACGATGGGGATGATCATCAATGAAACGCT AAGACTATACCCTCCCGTAACAGCATTGGGGGTGCGAAGAATCGACAAAGATGATGTAACGCTGGGGAAGCTCACCCTCCATGCTGACATCAGACTGCAA ATTCCAACTTTATGTCTCCATCGCAATCCCGGAATCTGGGGTGAAGATGCAAACCTATTCAAGCCCGAGAGGTTCTCCGAAGGAGTTGCGAAAGCCACAA ACAATAACCCTACCGCCTTCATCCCCTTCGGGATGGGACCCCGAAACTGCGTGGGAATCGACATTGGCAAGGACATGGTGAGAGTTGCACTTTCGATGAT TCTGCAGCGCTTTTGTTTCACTTTATCGCCCGGTTATGTCCATTCGCCTGATCCGTATATCCCGACAATTAGTCCCGGGAAGGGAATTCAAGTGATCTTG CATGCCCTCTGTGAGCACCATGAGGTTAGGACTGACAGCTTGAGCAGTCTCAAGGAAGTGAAGTGTCCAGCTATGATTCGTGCAGAAGAGGTCCAGTTAA ATTTAGAGCCTGCTTTTCCTAGCTTTCTGGTATATTTAGTCAGATCACATCTTGGACGTTGGTCCTGGATGGGTCTTCCGGGGCCTTTCTGTAGAGCAAA TTTACCACGGGGGGATACAATAGTTACTCTGCAAGACGAGGATGGGAAGGAATTCAACATCAAATACATTGGACACAGGACGGGATTGAGTACTGGATGG AGACAGTTCTGTGTTGCGCAGAACTTGCTTGAAGGAGATGTTTTAGTGTTCCAGTTAGTTGGAAACTGCAGATTTAGGGTGAGTACTGAGTTTACCTTGT CTTCTGCCAACTAA
AA sequence Show only first row Show all	>Lus10019354 pacid=23141348 polypeptide=Lus10019354 locus=Lus10019354.g ID=Lus10019354.BGIv1.0 annot-version=v1.0 MVKQALFDKNGNFPKAQWGFAYARKIMGTGIVTNDGEKWSKIRKLANLSFHGVKLKSMVPEMIDATENMLRRWKDKEEVHEEIEVYEEFRMLTGEMISRT AFGTSFDEGRQICDMIVKMKLLIDKNVFKFRLPIVSKIFKSRDYREVGRLERRIRACILEIVSKREEDHGVVKDDYLGLLIQAHHEREESSKISIDDLVD EFKTLYLAGHHTTNALISWIVLLLAIHQNWQQEARNEVFSVFGRDESPDVDGISKLETMGMIINETLRLYPPVTALGVRRIDKDDVTLGKLTLHADIRLQ IPTLCLHRNPGIWGEDANLFKPERFSEGVAKATNNNPTAFIPFGMGPRNCVGIDIGKDMVRVALSMILQRFCFTLSPGYVHSPDPYIPTISPGKGIQVIL HALCEHHEVRTDSLSSLKEVKCPAMIRAEEVQLNLEPAFPSFLVYLVRSHLGRWSWMGLPGPFCRANLPRGDTIVTLQDEDGKEFNIKYIGHRTGLSTGW RQFCVAQNLLEGDVLVFQLVGNCRFRVSTEFTLSSAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14640		CYP72A10	"cytochrome P450, family 72, s...		Lus10019354 [exp]	0	1
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	10.2	0.7880
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	30.9	0.7313
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10016232 [exp]	44.4	0.6925
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	49.5	0.7168
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10002182 [exp]	63.9	0.7181
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	84.2	0.7181
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	105.0	0.6947
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10021866 [exp]	124.9	0.6775
					Lus10004065 [exp]	139.5	0.6929
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10036803 [exp]	156.9	0.6701

Compare expression of checked genes

Lus10019354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.