Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59510 359 / 1e-121 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 203 / 8e-61 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 187 / 3e-55 Leucine-rich repeat (LRR) family protein (.1) AT5G65700 130 / 1e-32 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 126 / 3e-31 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G62230 126 / 4e-31 ERL1 ERECTA-like 1 (.1.2) AT3G49670 123 / 3e-30 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17750 122 / 6e-30 AtPEPR2 PEP1 receptor 2 (.1) AT5G48940 122 / 1e-29 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G03440 118 / 2e-29 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007417 [exp] 740 / 0 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 575 / 0 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10027040 [exp] 313 / 2e-106 AT3G59510 199 / 5e-62 Leucine-rich repeat (LRR) family protein (.1) Lus10028359 [exp] 174 / 3e-50 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10029622 [exp] 136 / 6e-36 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002822 [exp] 134 / 1e-35 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10011585 [exp] 137 / 1e-34 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028612 [exp] 134 / 1e-33 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10030526 [exp] 132 / 6e-33 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028400 [exp] 446 / 3e-155 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 442 / 2e-154 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 216 / 1e-65 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 214 / 7e-65 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 213 / 2e-64 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 189 / 6e-56 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 186 / 7e-55 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028325 [exp] 135 / 8e-38 AT3G59510 129 / 7e-36 Leucine-rich repeat (LRR) family protein (.1) Potri.002G258200 [exp] 136 / 1e-34 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.004G001000 [exp] 130 / 1e-33 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019356 pacid=23163220 polypeptide=Lus10019356 locus=Lus10019356.g ID=Lus10019356.BGIv1.0 annot-version=v1.0 ATGATGTCCAAAACATCCCCCTTGTCTTCTCCTACTCATTATCTTCTACTACTTGTATCAATAATCTTGGCTCTACCTTTCATTCCAGACCCAGTTGAGT CAATCACACATGTTCCTGACAGTGAAGCTCTTCGCGCTCTCAAGGAATCCATTGATCCTGTAACCATTACCGCCTCTTCATTTCTCTATAGCTGGGATTT CTCTGTCGATCCATGTGATAGCTCTGGAGCCTTTCTTGGAGTGTTATGCTCATTCCCTCTCGACAACTCAACTAGTAGAGTGGTAGCCATCGGCCTTGAT GCTGCTGGATATGATGGATTCCTTACCCCGGATATCGGAAATTTGACTGACCTCGCTACACTTGATCTCACAAACAACAACTTTCGAGGTCCCATCCCGG AGACCATTGCCAACCTCAGACAGCTGACCAAATTCCTCATTTCTGAGAATCTATTCACAGGCCAAATACCAGAAGGAATCGCCAAGCTCAAGAAACTTGA AGAGATTGACATATCACATAACCACCTCTCCGGAGACCTCCCGGCCAAAATCACATCTTTGAGGAGTCTGAACCGGCTAATCATATCTGACAACGCCATC ACTGGTAGGCTTCCTGACCTTTCAGGACTATGGCAGCTTAGTGCATTAGATATCAGTAACAATGAGCTGTATGGAAACATACCAAGACTCCCGCTTACCC TAAAAACTTTTTCCATGAGCAACAACATAATCTCTGGGCACATCTCCCCGGTCAAGCACCTTCAACGGCTTTTGGTAATGGACTTAAGCAACAACAGGCT GTCAGGTCCAATAATCCACGAAGTTCTCACCTTGTCATCGTTGGTTCGCCTCAACGTCTCCCACAACCATTTCACGGTGATGGAACCAATAGACTTTCCT GGAAGACAGACTCATCTACAGGTGCTTGATGCAAATGATAACCAGCTACATGGTCATTTGCCTCTCACATTGGCCGGCCTGGATAACCTTACATCCGTCG ACCTATCACATAACTACTTCTCTGGCTCAATACCGTTTGAGTATGGAGCCAAAGTCGGGCGCCCATGGAGATACCTCTTCTTGAATGACAACTTTCTCCA GGGAAGTCTGCCTCCACAGTTCACTGACGAAGCAAGGGAGATTAGAGGCAGCTTTGCTAATAACTGCTTGAGATGCACACAAACCGTTCCACTCTGTCGT GGAGGCCAACGGCCACACGTTGTTTGTGCCGCTCAGAGTGGATTCCAATGA
AA sequence Show only first row Show all	>Lus10019356 pacid=23163220 polypeptide=Lus10019356 locus=Lus10019356.g ID=Lus10019356.BGIv1.0 annot-version=v1.0 MMSKTSPLSSPTHYLLLLVSIILALPFIPDPVESITHVPDSEALRALKESIDPVTITASSFLYSWDFSVDPCDSSGAFLGVLCSFPLDNSTSRVVAIGLD AAGYDGFLTPDIGNLTDLATLDLTNNNFRGPIPETIANLRQLTKFLISENLFTGQIPEGIAKLKKLEEIDISHNHLSGDLPAKITSLRSLNRLIISDNAI TGRLPDLSGLWQLSALDISNNELYGNIPRLPLTLKTFSMSNNIISGHISPVKHLQRLLVMDLSNNRLSGPIIHEVLTLSSLVRLNVSHNHFTVMEPIDFP GRQTHLQVLDANDNQLHGHLPLTLAGLDNLTSVDLSHNYFSGSIPFEYGAKVGRPWRYLFLNDNFLQGSLPPQFTDEAREIRGSFANNCLRCTQTVPLCR GGQRPHVVCAAQSGFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10019356 [exp]	0	1
					Lus10038789 [exp]	3.5	0.6363
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	4.1	0.7180
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002275 [exp]	11.9	0.6507
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015305 [exp]	22.6	0.6372
AT1G17930			Aminotransferase-like, plant m...		Lus10024265 [exp]	34.0	0.5887
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10007417 [exp]	37.0	0.5802
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	39.1	0.5925
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10040940 [exp]	56.1	0.5750
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	69.0	0.5765
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011745 [exp]	71.0	0.5583

Compare expression of checked genes

Lus10019356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.