Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20320 462 / 2e-163 ABCI15, TGD2 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007420 [exp] 617 / 0 AT3G20320 542 / 0.0 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026100 [exp] 495 / 3e-176 AT3G20320 481 / 1e-170 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2) Potri.007G131700 [exp] 489 / 5e-174 AT3G20320 511 / 0.0 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02470 [flax] [poplar] MlaD MlaD protein
Representative CDS sequence Show only first row Show all	>Lus10019360 pacid=23163236 polypeptide=Lus10019360 locus=Lus10019360.g ID=Lus10019360.BGIv1.0 annot-version=v1.0 ATGTCGTCCTCACCTACGGCTACAGTTTTCTCCACTATGTTGTCCTCGTCCATGGTGGTTGTCCCCCATCGTTCCACCAACAATTTGCCTTATCTACCCC TCAAGCCTCAAAGGAGGATGCCATTGATTCATGCTATGAGTTCAGACACAGAACACGGCCAGCCTCTACCATCCTCAAAGACAAGGAATCCGTTGTCACT TGTTTTGGAGGTTCCCCAAACCCTTTGGAGACAAACGCTAAAACCACTAAGTGATTTTGGGTTTGGCAGGAGAAGCATTTGGGAAGGTGGGGTGGGCTTG TTTCTCGTATCAGGTGCAGTGCTCCTTGCACTCAGTTTGGCTTGGTTGAGAGGGTTTCAACTGCGCTCTAAATTCAGAAAGTACCATGCTGTATTAGAGT TTGCTCAGGCTTGTGGTATTTGTACCGGGACACCCGTTAGGATTAGAGGGGTGACTGTTGGCAATGTCATCCGTGTGAACCCTTCATTGAGAAGTATTGA AGCAGTAGTGGAGGTTGAAGATGATAAGATAATCATACCAAGAAATTCACTGGTCGAGGTCAATCAATCTGGTCTTCTAATGGAAACTATGATTGATATT ACCCCACGTGACCCAATTCCAACACCCTCTGTAGGACCTCTAGATTTGGATTGCCTCAAAGAAGGTCTAATTGTATGTGACAGAGAAAGGTTGAAGGGCT ATCAAGGTGTAAGTTTGGATGCAATGGTAGGCATATTCACCCGTCTTGGACGTGAGATGGAGGAAATTGGTGTTGCCAATACCTATTCACTAGCTGAGCG TGTTGCTGCTATCAAAGCCATGGCAGAAGATGTCAAGCCTTTGTTGGCTGAAGTCCGTGAAAGAGGTCTCGTGAAGGAAGTTGAAGCTTTAAAAAAAGGC CTCACTCAAGCCTCTGAAGATTTAAGAAAAGCACGCACCTCCGTTTTGACGCCTGAGAACACAGAGTTAATTCAACGATCAATTTATAGCCTCATTTTCA CATTGAAGAATGTCGAGAATATAAGCTCAGACATTCTGGGATTCACTGGCGATGAGGTGACAAGGCGAAATTTGAAAGCACTTATAAAGTCCCTCAGCAG ATTGCTGTGA
AA sequence Show only first row Show all	>Lus10019360 pacid=23163236 polypeptide=Lus10019360 locus=Lus10019360.g ID=Lus10019360.BGIv1.0 annot-version=v1.0 MSSSPTATVFSTMLSSSMVVVPHRSTNNLPYLPLKPQRRMPLIHAMSSDTEHGQPLPSSKTRNPLSLVLEVPQTLWRQTLKPLSDFGFGRRSIWEGGVGL FLVSGAVLLALSLAWLRGFQLRSKFRKYHAVLEFAQACGICTGTPVRIRGVTVGNVIRVNPSLRSIEAVVEVEDDKIIIPRNSLVEVNQSGLLMETMIDI TPRDPIPTPSVGPLDLDCLKEGLIVCDRERLKGYQGVSLDAMVGIFTRLGREMEEIGVANTYSLAERVAAIKAMAEDVKPLLAEVRERGLVKEVEALKKG LTQASEDLRKARTSVLTPENTELIQRSIYSLIFTLKNVENISSDILGFTGDEVTRRNLKALIKSLSRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	0	1
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	2.6	0.8813
AT3G01810			unknown protein		Lus10041590 [exp]	2.8	0.8759
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	5.0	0.8484
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	9.3	0.8149
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	9.8	0.8532
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	10.7	0.8613
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020917 [exp]	12.6	0.8453
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	13.4	0.8396
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	13.7	0.8427
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	15.3	0.8224

Compare expression of checked genes

Lus10019360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.