Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25110 334 / 8e-118 AtSDF2, ATSDL, SDF2 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010594 [exp] 411 / 3e-148 AT2G25110 350 / 4e-124 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263200 [exp] 356 / 1e-126 AT2G25110 345 / 2e-122 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1) Potri.018G020700 [exp] 355 / 3e-126 AT2G25110 347 / 7e-123 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF02815 [flax] [poplar] MIR MIR domain
Representative CDS sequence Show only first row Show all	>Lus10019365 pacid=23163238 polypeptide=Lus10019365 locus=Lus10019365.g ID=Lus10019365.BGIv1.0 annot-version=v1.0 ATGGCTTTATCGTTTCTAGGCGTCGCCGTGTTTCTATTCCTCAACCTCGATCTAGATCAGGCCTCCTTCTCCCCTGCATCCGCTGCTTCTTCTACTTCTC AAGGCGTCGAGATTACATATGGCACAGTTCTAAAGCTGATGCACGAGAAGACGAGATTTCGACTGCATTCACATGAGGTGCCCTATGGTTCCGGCAGTGG ACAGCAATCCGTTACAGGATTTCCAAGTGTTGATGATTCTAATAGTTATTGGATTGTAAGGCCTGAGCTGGACACTAATGCTAAACAAGGGGACACCATG ACAACAGGGACGATTTTCCGTTTGCAGCATATGAAGACTAGAAAATGGCTGCACAGTCATTTGCATGCCTCGCCAATATCTGGCAACCTTGAGGTTAGCT GCTTTGGTGGAGAAACTGAATCCGATACGGGGGATCACTGGAGCCTTACAATTGAGGGTGGTGAAAAGACCTGGAAACAAAATCAAAGAGTTCGATTGCA ACACGTTGACACCGGTGGCTACTTACACAGTCATGACAAGAAGTACCAGAGAATAGCTGGCGGACAACAAGAGGTGTGCGGTGTCCGGGAAAAGCGTGCG GACAATGTGTGGTTAGCAGTAGAAGGTGTGTACCTTCCAGTGGCAGGAAGCAAGTAG
AA sequence Show only first row Show all	>Lus10019365 pacid=23163238 polypeptide=Lus10019365 locus=Lus10019365.g ID=Lus10019365.BGIv1.0 annot-version=v1.0 MALSFLGVAVFLFLNLDLDQASFSPASAASSTSQGVEITYGTVLKLMHEKTRFRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYWIVRPELDTNAKQGDTM TTGTIFRLQHMKTRKWLHSHLHASPISGNLEVSCFGGETESDTGDHWSLTIEGGEKTWKQNQRVRLQHVDTGGYLHSHDKKYQRIAGGQQEVCGVREKRA DNVWLAVEGVYLPVAGSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	0	1
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	2.2	0.9284
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	2.8	0.9260
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	5.7	0.9184
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	6.3	0.9025
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	7.9	0.9052
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	8.0	0.9146
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10011502 [exp]	8.1	0.9000
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	8.1	0.8955
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020416 [exp]	8.4	0.9011
AT5G21070			unknown protein		Lus10026764 [exp]	9.2	0.8932

Compare expression of checked genes

Lus10019365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.