Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44060 137 / 3e-40 Late embryogenesis abundant protein, group 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008337 [exp] 167 / 1e-51 AT2G44060 465 / 2e-165 Late embryogenesis abundant protein, group 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G146300 [exp] 152 / 4e-46 AT2G44060 448 / 2e-159 Late embryogenesis abundant protein, group 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10019367 pacid=23163247 polypeptide=Lus10019367 locus=Lus10019367.g ID=Lus10019367.BGIv1.0 annot-version=v1.0 ATGACTTCGATTTGGGTCTTTAAGTCACTAGAATGTGAGATTTGGCTATCTGATGTGAGCATTGGATGTGCGGAGCTTTCAAAATCAACTACCATTGCAA AGAAGGAAGTAAGTTACGTTGACATCCCTATCACATTCAGGCCCAAGGATTTTGGGGCAGCTCTCTGGGACATGATCCGTGGTAAAGGTACAGGTTACAG CTTCAAAGGGAATGTCCATGTGGACACTCCATTTGGTGCAATGAAGCTGCCCATCATCAAAGAAGGTGGCACAACTCGGCTGAAGAAGAGCAAGGAAGAT GGTGGAGATGATGACGATGACGATGAGCTATGTTTCTTTATCCTCACCTGCATTTACATTTGTGTCGTCCATCCTCTCCGCGTGGTTGGCCCTTCATTTA TTTGTTTTAGATTAAATGAATAA
AA sequence Show only first row Show all	>Lus10019367 pacid=23163247 polypeptide=Lus10019367 locus=Lus10019367.g ID=Lus10019367.BGIv1.0 annot-version=v1.0 MTSIWVFKSLECEIWLSDVSIGCAELSKSTTIAKKEVSYVDIPITFRPKDFGAALWDMIRGKGTGYSFKGNVHVDTPFGAMKLPIIKEGGTTRLKKSKED GGDDDDDDELCFFILTCIYICVVHPLRVVGPSFICFRLNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	0	1
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	2.4	0.9353
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	3.3	0.8454
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	3.7	0.9308
					Lus10001343 [exp]	4.2	0.9281
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10043171 [exp]	5.2	0.8560
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	5.5	0.8834
AT1G50660			unknown protein		Lus10002072 [exp]	5.7	0.9008
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	5.9	0.8978
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	6.3	0.8648
					Lus10002271 [exp]	7.7	0.7251

Compare expression of checked genes

Lus10019367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.