Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43500 628 / 0 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 605 / 0 NLP9 Plant regulator RWP-RK family protein (.1.2) AT1G64530 391 / 3e-122 NLP6 Plant regulator RWP-RK family protein (.1) AT1G76350 389 / 1e-121 NLP5 Plant regulator RWP-RK family protein (.1) AT4G24020 387 / 9e-120 NLP7 NIN like protein 7 (.1) AT1G20640 381 / 2e-118 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G38340 272 / 7e-79 NLP3 Plant regulator RWP-RK family protein (.1) AT4G35270 244 / 9e-68 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 238 / 1e-67 NLP1 Plant regulator RWP-RK family protein (.1.2) AT5G66990 56 / 4e-08 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008143 [exp] 1626 / 0 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 376 / 2e-115 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10016018 [exp] 370 / 6e-114 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 368 / 3e-113 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014428 [exp] 345 / 5e-105 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 342 / 3e-104 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023049 [exp] 342 / 3e-104 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10013224 [exp] 332 / 3e-101 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 330 / 8e-101 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133400 [exp] 986 / 0 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 832 / 0 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.003G143000 [exp] 416 / 6e-130 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 402 / 2e-125 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.001G087900 [exp] 402 / 1e-124 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.005G251700 [exp] 394 / 2e-122 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 362 / 2e-110 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 348 / 2e-105 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 348 / 4e-105 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 343 / 2e-103 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10019368 pacid=23163233 polypeptide=Lus10019368 locus=Lus10019368.g ID=Lus10019368.BGIv1.0 annot-version=v1.0 ATGGAGTACTCATTTTCCTCGAAAGTAAAAGGTGACGAATTTTCAGCTGAGATAGCATCTCCAGTAGATGGTCATTCAAGAAATTCAATCTTGGGTGATA CCGGTGACAAATTTGTAGAGCTGATGAATTTGGACACATATCCTGGATGGTGTAATGGCTCTTCTGCGATGGAACACTTGTTTGTTTCAAATGACTTATC GTCGTTGCAGCCGTTTCCATTAGGATCTTTCGATACGTTAAATCTTGCTGAACAACCTAGTTATCTTTTCCCTAATGGCAATGAATCAGATGGTGCGGGA ACCTCTCACGATTGTGGAGACAAAATAACCTGTGAGAAAAATGACTCACAGTTTGTTTATTCATCGCCATCGAGCGCAGAGAATGGTTTTGTTAGCAATG GTTCCAATCAACAGAAAAATATCATGGAAGAAGACGTTAATTGTATTGTCTCTTGCCCTGTCCGCTGCTCATTAGATGAGAAAATGTTGAAGGCATTATC TTTTCTGAGAGAGTTTTCTGGAGATGGCATATTAGCACAAGTTTGGGTTCCTGTAAGGCAGGGTGATCAATATGTCTTAACAACGTCAAACCAGCCTTAC TTGCTTGATAAAATTCTAGCAGGGTATCGAGAAGTCTCGAGGACGTTTACCTTCTCTGCAGACTTACAGTCTGGTCTTCCTTTAGGGCTTCCAGGCCGTG TTTTCATCTCCAAAGTTCCTGAGTGGACCTCAAATATAGTTCATTACAACAAGGCCGAGTATGTGCGGGTGAATCATGCGGTTGACCATGATGTCCGGGG TTCAGTTGCTTTGCCCATTCTTGAACCTTCGAACATTTCCTGCTGTGCTGTGCTGGAACTCGTCACTATTAAGGAGAAGTCGGATTTTGATTCTGAGATG AAGAACATTTGCAAAGCACTCCAGGCTGTGAATTTAAGAAGCACTCTCCCACCTCGCCTTCTACCCGAAATAAGGGATGTCCTACGAGCAGTATGCCATG CACATAAATTACCTTTAGCTCTAACTTGGATTCCTTGCTATTATACGGAGGAATCTCTAGATAAAATCGAAAGAGTATGTGTAAGAGAAGGAGATTCGCG GCCTACTGGAAAATGTGTATTGTGCATAGAAGATACAGCTTGTTATGTGAATGACATATCAATGCAAGGATTTGTGCATGTTTGTGTGGAGCATTATATT GAAGAAGGGCAAGGCATTTCTGGAAAAGCACTTCAATCAAATCACCCGTTCTTCATCCCAGATGTGAAGACATATGACATATCTGAGTATCCACTTGTCC ATCACACCCGTAAATATGGGTTAAATGCTGCAGTTGCTATCAGGCTAAGAAGCACCTACACTGGTGACCATGACTATATCCTGGAACTCTTTCTGCCCGT CAACATAACACGGAGTCAGGAGCAGCAACTCTTGTTAAACAACCTGTCAAGTACAATGCAAAAGATCTGTAGGAGCTTGAGAACAGTTTCCGATGCAGAA TTAGCTGCAGGTGTAGGTAATGGACTTGGATATCAAAAGGAATCGATTCCCATCTTCCCAGAAATCTCAAGAACGGAGAGAAACTCTAAAAGCCCGTTAT CAAGTGTGAATTTGAACACTGTGGGTAAGATGGATTTCAATGCATCCAGCTGTAGAATCAACAGAATAGAATCTCGGGCAATGGTTGGATCCCGAAAACA GCTGGAAAAGAAAAGGAGAACTGCTGAGAAGACTGTGAGTTTAAGTGTTCTTCAACAATACTTCTCTGGAAGCCTCAAGGATGCTGCCAAAAGCATTGGG GTTTGCCCTACAACATTGAAAAGGATATGCAGGCAACATGGAATATCAAGATGGCCATCCCGAAAGATAAACAAAGTGAACCGTTCGTTAAGGAAAATCC AAACTGTACTTGATTCAGTTCAAGGTGTAGAAGGAGGATTGAAATTTGACCCTGGCACGGGCGGATTTATGGCAGCTGGGGCCATGGTCGATGAATTTGA TTCAGATGGAAGAACTCTCTTTCCTAACAACAGTATTCCTGCTCAGCATTCAGAACCGTTGGCTGAATGTGTTGCTGTCGAGGGTAGTACTTCGACTGAT AAAGTTGATGACAGTTCTACAGCCACTGTTAGGAGAGCGGCAAAAGAATCTAGCTCGCCTTTGGTTTACGCAAGTGAGGATTCCAAGTCTCAACAATTCG GTTTTCATGAAGCCATGTCCCCTCCTCGTTGGTTTGCAGGAGATGCAGAAGCTGAGAAAACAAGTTCCCAGCATCGATCTTGGAGCTCGAGCTCCTTGGC TGGTGGAGAGGAGAACGACACAATAGATCATAACCAGCTTGGTTGTTCCAGCTCATCACATGGGTCTGAATCTGCTGCAAAGCCTGGGTGCAGTTCAAGC TCTCAGAGTTTTAAGGAGGGTAGGCATCCAAGAAGCCAAGGGCAAAGTAGCGGGTGGAAGATCACTATGAAGGCTACTTATAAAGAAGACACAATCAGGT TCAAGTTTGAAACGCGTGCAGGGTGTTTTCAGCTATACAAAGAAGTTGGAAAGAGATTCAAACTGCAAACGGGGACATTCCAGCTCAAGTACCTTGACGA CGAAGAAGAGTGGGTGTTACTGACAAGCGACTCCGACCTGCAGGAGTGCTGTGAAATATTGGATTACACAGAGAAGGAAAGTGTGAAGTTAGCAGTGCGG GATACACCCTTCGAGACTGGAAGCTCGGGGAGCAGCAATTGCTTTTTGGCAGGAAGCTCATAG
AA sequence Show only first row Show all	>Lus10019368 pacid=23163233 polypeptide=Lus10019368 locus=Lus10019368.g ID=Lus10019368.BGIv1.0 annot-version=v1.0 MEYSFSSKVKGDEFSAEIASPVDGHSRNSILGDTGDKFVELMNLDTYPGWCNGSSAMEHLFVSNDLSSLQPFPLGSFDTLNLAEQPSYLFPNGNESDGAG TSHDCGDKITCEKNDSQFVYSSPSSAENGFVSNGSNQQKNIMEEDVNCIVSCPVRCSLDEKMLKALSFLREFSGDGILAQVWVPVRQGDQYVLTTSNQPY LLDKILAGYREVSRTFTFSADLQSGLPLGLPGRVFISKVPEWTSNIVHYNKAEYVRVNHAVDHDVRGSVALPILEPSNISCCAVLELVTIKEKSDFDSEM KNICKALQAVNLRSTLPPRLLPEIRDVLRAVCHAHKLPLALTWIPCYYTEESLDKIERVCVREGDSRPTGKCVLCIEDTACYVNDISMQGFVHVCVEHYI EEGQGISGKALQSNHPFFIPDVKTYDISEYPLVHHTRKYGLNAAVAIRLRSTYTGDHDYILELFLPVNITRSQEQQLLLNNLSSTMQKICRSLRTVSDAE LAAGVGNGLGYQKESIPIFPEISRTERNSKSPLSSVNLNTVGKMDFNASSCRINRIESRAMVGSRKQLEKKRRTAEKTVSLSVLQQYFSGSLKDAAKSIG VCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQTVLDSVQGVEGGLKFDPGTGGFMAAGAMVDEFDSDGRTLFPNNSIPAQHSEPLAECVAVEGSTSTD KVDDSSTATVRRAAKESSSPLVYASEDSKSQQFGFHEAMSPPRWFAGDAEAEKTSSQHRSWSSSSLAGGEENDTIDHNQLGCSSSSHGSESAAKPGCSSS SQSFKEGRHPRSQGQSSGWKITMKATYKEDTIRFKFETRAGCFQLYKEVGKRFKLQTGTFQLKYLDDEEEWVLLTSDSDLQECCEILDYTEKESVKLAVR DTPFETGSSGSSNCFLAGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Lus10019368 [exp]	0	1
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	2.8	0.7900
AT1G71820		SEC6	SEC6 (.1.2)		Lus10026982 [exp]	11.2	0.7753
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	15.6	0.7837
AT3G62010			unknown protein		Lus10038011 [exp]	16.6	0.7165
AT5G02930			F-box/RNI-like superfamily pro...		Lus10024702 [exp]	17.1	0.7708
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	17.6	0.7867
AT5G55060			unknown protein		Lus10000118 [exp]	20.3	0.7476
AT1G17450			B-block binding subunit of TFI...		Lus10015660 [exp]	27.2	0.7215
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	27.6	0.7771
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	29.2	0.7608

Compare expression of checked genes

Lus10019368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.